Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | WOC52_RS06640 | Genome accession | NZ_CP150739 |
| Coordinates | 1308341..1308844 (+) | Length | 167 a.a. |
| NCBI ID | WP_000934799.1 | Uniprot ID | A0A7U7IE99 |
| Organism | Staphylococcus aureus strain TUM22721 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1308341..1329441 | 1308341..1308844 | within | 0 |
Gene organization within MGE regions
Location: 1308341..1329441
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| WOC52_RS06640 (WOC52_06640) | ssbA | 1308341..1308844 (+) | 504 | WP_000934799.1 | single-stranded DNA-binding protein | Machinery gene |
| WOC52_RS06645 (WOC52_06645) | rpsR | 1308896..1309138 (+) | 243 | WP_000897044.1 | 30S ribosomal protein S18 | - |
| WOC52_RS06650 (WOC52_06650) | - | 1309320..1310150 (-) | 831 | WP_000357934.1 | KilA-N domain-containing protein | - |
| WOC52_RS06655 (WOC52_06655) | - | 1310633..1311850 (-) | 1218 | WP_000270130.1 | site-specific integrase | - |
| WOC52_RS06660 (WOC52_06660) | - | 1312306..1313001 (-) | 696 | WP_000668212.1 | helix-turn-helix domain-containing protein | - |
| WOC52_RS06665 (WOC52_06665) | - | 1313145..1313357 (+) | 213 | WP_000794656.1 | helix-turn-helix transcriptional regulator | - |
| WOC52_RS06670 (WOC52_06670) | - | 1313358..1313630 (+) | 273 | WP_000091734.1 | helix-turn-helix domain-containing protein | - |
| WOC52_RS06675 (WOC52_06675) | - | 1313642..1313788 (+) | 147 | WP_031824147.1 | hypothetical protein | - |
| WOC52_RS06680 (WOC52_06680) | - | 1313781..1313990 (+) | 210 | WP_001058486.1 | hypothetical protein | - |
| WOC52_RS06685 (WOC52_06685) | - | 1313993..1314310 (+) | 318 | WP_001103936.1 | DUF1474 family protein | - |
| WOC52_RS06690 (WOC52_06690) | - | 1314374..1315243 (+) | 870 | WP_001002700.1 | primase alpha helix C-terminal domain-containing protein | - |
| WOC52_RS06695 (WOC52_06695) | - | 1315260..1316729 (+) | 1470 | WP_001795628.1 | virulence-associated E family protein | - |
| WOC52_RS06700 (WOC52_06700) | - | 1317015..1317377 (+) | 363 | WP_108932420.1 | pathogenicity island protein | - |
| WOC52_RS06705 (WOC52_06705) | - | 1317379..1317663 (+) | 285 | WP_000998182.1 | hypothetical protein | - |
| WOC52_RS06710 (WOC52_06710) | - | 1317660..1318301 (+) | 642 | WP_001019769.1 | hypothetical protein | - |
| WOC52_RS06715 (WOC52_06715) | - | 1318648..1318989 (+) | 342 | WP_001161659.1 | hypothetical protein | - |
| WOC52_RS06720 (WOC52_06720) | - | 1319001..1319579 (+) | 579 | WP_000846292.1 | hypothetical protein | - |
| WOC52_RS06725 (WOC52_06725) | - | 1319597..1319815 (+) | 219 | WP_000448775.1 | capsid morphogenesis B protein | - |
| WOC52_RS06730 (WOC52_06730) | - | 1319866..1320393 (+) | 528 | WP_000771356.1 | spore coat protein | - |
| WOC52_RS06735 (WOC52_06735) | - | 1320396..1320737 (+) | 342 | WP_000358778.1 | hypothetical protein | - |
| WOC52_RS06740 (WOC52_06740) | - | 1320734..1321303 (+) | 570 | WP_001293080.1 | terminase small subunit | - |
| WOC52_RS06745 (WOC52_06745) | - | 1321350..1321433 (+) | 84 | Protein_1301 | terminase small subunit | - |
| WOC52_RS06750 (WOC52_06750) | - | 1321580..1322548 (+) | 969 | WP_000801979.1 | Abi family protein | - |
| WOC52_RS06755 (WOC52_06755) | - | 1323032..1323153 (+) | 122 | Protein_1303 | hypothetical protein | - |
| WOC52_RS06760 (WOC52_06760) | - | 1323396..1323548 (+) | 153 | WP_001795626.1 | hypothetical protein | - |
| WOC52_RS06765 (WOC52_06765) | - | 1323619..1323729 (+) | 111 | WP_000139423.1 | hypothetical protein | - |
| WOC52_RS06770 (WOC52_06770) | - | 1323731..1323916 (+) | 186 | WP_001286805.1 | hypothetical protein | - |
| WOC52_RS06775 (WOC52_06775) | - | 1325055..1325993 (-) | 939 | WP_001822249.1 | Abi family protein | - |
| WOC52_RS06780 (WOC52_06780) | - | 1326032..1326739 (-) | 708 | Protein_1308 | tyrosine-type recombinase/integrase | - |
| WOC52_RS06785 (WOC52_06785) | selX | 1326939..1327550 (+) | 612 | WP_000475326.1 | staphylococcal enterotoxin-like toxin X | - |
| WOC52_RS06790 (WOC52_06790) | - | 1327919..1328287 (+) | 369 | WP_108932421.1 | YxeA family protein | - |
| WOC52_RS06795 (WOC52_06795) | - | 1328468..1329040 (+) | 573 | WP_000769720.1 | PepSY domain-containing protein | - |
| WOC52_RS06800 (WOC52_06800) | - | 1329178..1329441 (-) | 264 | WP_001055897.1 | helix-turn-helix transcriptional regulator | - |
Sequence
Protein
Download Length: 167 a.a. Molecular weight: 18539.12 Da Isoelectric Point: 4.7305
>NTDB_id=971516 WOC52_RS06640 WP_000934799.1 1308341..1308844(+) (ssbA) [Staphylococcus aureus strain TUM22721]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
Nucleotide
Download Length: 504 bp
>NTDB_id=971516 WOC52_RS06640 WP_000934799.1 1308341..1308844(+) (ssbA) [Staphylococcus aureus strain TUM22721]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
65.341 |
100 |
0.689 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
54.971 |
100 |
0.563 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
63.473 |
0.371 |
| ssb | Glaesserella parasuis strain SC1401 |
34.463 |
100 |
0.365 |