Detailed information
Bioinformatically predicted
Overview
| Name | fimT | Type | Machinery gene |
| Locus tag | ACLOAX_RS11905 | Genome accession | NZ_CP178386 |
| Coordinates | 2505263..2505778 (+) | Length | 171 a.a. |
| NCBI ID | WP_000477147.1 | Uniprot ID | - |
| Organism | Acinetobacter baumannii strain RP15 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2500263..2510778
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACLOAX_RS11885 (ACLOAX_11885) | - | 2500582..2502042 (+) | 1461 | WP_000004971.1 | amino acid permease | - |
| ACLOAX_RS11890 (ACLOAX_11890) | - | 2502319..2503524 (+) | 1206 | WP_000512707.1 | RtcB family protein | - |
| ACLOAX_RS11895 (ACLOAX_11895) | - | 2503543..2503686 (+) | 144 | WP_162138624.1 | hypothetical protein | - |
| ACLOAX_RS11900 (ACLOAX_11900) | omp38 | 2503811..2504881 (-) | 1071 | WP_000777882.1 | outer membrane protein Omp38 | - |
| ACLOAX_RS11905 (ACLOAX_11905) | fimT | 2505263..2505778 (+) | 516 | WP_000477147.1 | GspH/FimT family pseudopilin | Machinery gene |
| ACLOAX_RS11910 (ACLOAX_11910) | - | 2505887..2507062 (+) | 1176 | WP_000129968.1 | thiolase family protein | - |
| ACLOAX_RS11915 (ACLOAX_11915) | - | 2507189..2507632 (+) | 444 | WP_001176580.1 | VOC family protein | - |
| ACLOAX_RS11920 (ACLOAX_11920) | - | 2507675..2508028 (-) | 354 | WP_000457787.1 | DMT family transporter | - |
| ACLOAX_RS11925 (ACLOAX_11925) | - | 2508110..2508595 (-) | 486 | WP_000935249.1 | DUF934 domain-containing protein | - |
| ACLOAX_RS11930 (ACLOAX_11930) | - | 2508588..2510231 (-) | 1644 | WP_000281766.1 | nitrite/sulfite reductase | - |
Sequence
Protein
Download Length: 171 a.a. Molecular weight: 19587.81 Da Isoelectric Point: 8.4960
>NTDB_id=971514 ACLOAX_RS11905 WP_000477147.1 2505263..2505778(+) (fimT) [Acinetobacter baumannii strain RP15]
MFKSPGFTIVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NRVISFVDNNHNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGSSGLPIESNGSFIYCSYDQLKNFKLILSKM
GHVRLEELKNC
MFKSPGFTIVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NRVISFVDNNHNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGSSGLPIESNGSFIYCSYDQLKNFKLILSKM
GHVRLEELKNC
Nucleotide
Download Length: 516 bp
>NTDB_id=971514 ACLOAX_RS11905 WP_000477147.1 2505263..2505778(+) (fimT) [Acinetobacter baumannii strain RP15]
ATGTTTAAATCTCCTGGTTTTACTATAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGTATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTTCTTTGTCCAAGTTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCGTAATCAGCTTTGTAGATAATAACCATAATCTACAGCATGATTTAAATGAAGAGTTATTAACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAGTTCTGGAC
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGCCATGTGCGCTTAGAAGAACTTAAAAATTGTTAG
ATGTTTAAATCTCCTGGTTTTACTATAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGTATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTTCTTTGTCCAAGTTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCGTAATCAGCTTTGTAGATAATAACCATAATCTACAGCATGATTTAAATGAAGAGTTATTAACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAGTTCTGGAC
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGCCATGTGCGCTTAGAAGAACTTAAAAATTGTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| fimT | Acinetobacter baylyi ADP1 |
43.373 |
97.076 |
0.421 |