Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   ACJX2R_RS35675 Genome accession   NZ_CP178360
Coordinates   8379919..8382066 (+) Length   715 a.a.
NCBI ID   WP_413106020.1    Uniprot ID   -
Organism   Streptomyces sp. Inha503     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 8374919..8387066
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJX2R_RS35650 (ACJX2R_35725) - 8375140..8375373 (-) 234 WP_037948554.1 Lrp/AsnC family transcriptional regulator -
  ACJX2R_RS35655 (ACJX2R_35730) - 8375510..8376478 (+) 969 WP_020868182.1 thiamine-phosphate kinase -
  ACJX2R_RS35660 (ACJX2R_35735) thiD 8376602..8377441 (+) 840 WP_413103450.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  ACJX2R_RS35665 (ACJX2R_35740) rpmB 8377532..8377717 (-) 186 WP_009714771.1 50S ribosomal protein L28 -
  ACJX2R_RS35670 (ACJX2R_35745) - 8377983..8379761 (+) 1779 WP_413103451.1 DAK2 domain-containing protein -
  ACJX2R_RS35675 (ACJX2R_35750) recG 8379919..8382066 (+) 2148 WP_413106020.1 ATP-dependent DNA helicase RecG Machinery gene
  ACJX2R_RS35680 (ACJX2R_35755) rsmD 8382191..8382778 (+) 588 WP_413103452.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  ACJX2R_RS35685 (ACJX2R_35760) coaD 8382775..8383284 (+) 510 WP_182470741.1 pantetheine-phosphate adenylyltransferase -
  ACJX2R_RS35690 (ACJX2R_35765) - 8383392..8384465 (+) 1074 WP_413103453.1 cell division initiation protein -
  ACJX2R_RS35695 (ACJX2R_35770) - 8384660..8385250 (+) 591 WP_413103454.1 YceD family protein -
  ACJX2R_RS35700 (ACJX2R_35775) rpmF 8385253..8385426 (+) 174 WP_037948573.1 50S ribosomal protein L32 -
  ACJX2R_RS35705 (ACJX2R_35780) rnc 8385446..8386282 (+) 837 WP_201850897.1 ribonuclease III -

Sequence

Protein


Download         Length: 715 a.a.        Molecular weight: 77178.12 Da        Isoelectric Point: 6.1185

>NTDB_id=971453 ACJX2R_RS35675 WP_413106020.1 8379919..8382066(+) (recG) [Streptomyces sp. Inha503]
MADHLDLHTVGDLLHHYPRRYAERGELTRLSDLPLDEHVTVVAQVADARVHTFNGGRGRRLEVTITDGSGRLQLVFFGKG
VHKPRTELQPGTRAMFAGKVSVFNRKRQLAHPEFKTLGAGSGAEAVEAFANQLLPLYPACKQMESWQIQQAVDTVLGPAG
HEESALAGLIDPLPESLREGRGLATLPEALRKIHRPGTKADIATARDRLKWDEAFVLQVALARRRQADAQLPAAPRKPAP
DGLLTAFDARLPFTLTEGQRKVSEEIFADLATDHPMHRLLQGEVGSGKTMVALRAMLGVVDAGGQAAMLAPTEVLAQQHH
RSITEMMGELAEGGMLGGAEQGTKVVLLTGSMGAAARRQALLDLVTGEAGIVIGTHALIEDKVQFHDLGLVVVDEQHRFG
VEQRDALRSKGKQPPHLLVMTATPIPRTVAMTVFGDLETSVLDQLPSGRSPIASHVVPAKDKPHFLARAWERVREEVAAG
HQGYVVCPRIGDEEDESKAAKEKSAEDEAEKRPPLAVVDVAEQLVKGPLSDLRVEVLHGRMQPEAKDEVMRRFAAGEVDV
LVATTVIEVGVNVPNATAMVIMDADRFGVSQLHQLRGRVGRGAAAGLCLLVTDMPEGSPARARLGAVAATFDGFELSRID
LEQRREGDVLGQAQSGVRSSLRVLAVIDDEEVIAAAREEAAAIVAADPELTGYPQLRTALDALLDKERAEFLDKG

Nucleotide


Download         Length: 2148 bp        

>NTDB_id=971453 ACJX2R_RS35675 WP_413106020.1 8379919..8382066(+) (recG) [Streptomyces sp. Inha503]
ATGGCCGACCATCTCGACCTGCACACCGTCGGCGACCTGCTGCACCACTACCCGCGGCGGTACGCGGAGCGCGGTGAGCT
GACCCGGCTGTCCGACCTGCCCCTGGACGAGCATGTGACCGTGGTGGCGCAGGTCGCCGACGCCCGGGTGCACACGTTCA
ACGGCGGCCGGGGCCGGCGGCTGGAGGTCACCATCACCGACGGCAGCGGCCGTCTCCAGCTGGTCTTCTTCGGCAAGGGC
GTCCACAAGCCGCGTACGGAGCTCCAGCCCGGCACCCGCGCGATGTTCGCCGGGAAGGTCTCGGTCTTCAACCGCAAGCG
GCAGCTGGCCCACCCGGAGTTCAAGACGCTGGGCGCGGGGAGCGGCGCGGAGGCCGTGGAGGCGTTCGCCAATCAGCTGC
TGCCGCTGTACCCGGCGTGCAAGCAGATGGAGTCCTGGCAGATCCAGCAGGCCGTCGACACCGTGCTCGGCCCGGCCGGT
CACGAGGAGTCCGCGCTGGCCGGGCTGATCGACCCGCTGCCCGAGAGCCTGCGCGAGGGCCGGGGGCTGGCCACGCTCCC
CGAGGCGCTGCGCAAGATCCACCGGCCGGGCACCAAGGCCGATATCGCGACGGCCCGGGACCGGCTGAAGTGGGACGAGG
CGTTCGTCCTCCAGGTGGCGCTCGCCCGGCGGCGGCAGGCCGACGCCCAGCTGCCCGCCGCGCCCCGCAAGCCCGCCCCG
GACGGGCTGCTGACCGCCTTCGACGCCCGGCTGCCGTTCACCCTCACCGAGGGCCAGCGCAAGGTCAGCGAGGAGATCTT
CGCCGACCTCGCCACCGACCACCCCATGCACCGGCTGCTCCAGGGGGAGGTCGGCTCGGGCAAGACCATGGTCGCGCTGC
GCGCGATGCTCGGCGTCGTGGACGCCGGGGGACAGGCGGCGATGCTCGCGCCCACGGAGGTGCTCGCCCAGCAGCACCAC
CGCTCGATCACCGAGATGATGGGGGAGCTGGCGGAGGGGGGAATGCTGGGCGGTGCGGAGCAGGGCACCAAGGTGGTGCT
GCTCACCGGCTCCATGGGTGCCGCGGCCCGCCGTCAGGCGCTGCTGGACCTGGTCACCGGCGAGGCCGGGATCGTGATCG
GCACCCATGCCCTGATCGAGGACAAGGTCCAGTTCCACGATCTCGGCCTGGTGGTCGTGGACGAACAGCACCGCTTCGGG
GTCGAGCAGCGCGACGCCCTGCGCTCCAAGGGCAAGCAGCCCCCGCATCTGCTGGTGATGACGGCCACGCCGATCCCGCG
CACCGTCGCCATGACCGTCTTCGGCGACCTGGAGACCTCCGTCCTGGACCAGCTGCCCTCGGGCCGCTCCCCGATCGCCT
CCCATGTGGTGCCCGCCAAGGACAAGCCGCACTTCCTGGCCCGCGCCTGGGAGCGGGTGCGCGAGGAGGTGGCCGCCGGT
CACCAGGGCTATGTGGTGTGCCCCCGGATCGGGGACGAGGAGGACGAGTCCAAGGCGGCGAAGGAGAAGTCCGCCGAGGA
CGAGGCCGAGAAGCGCCCGCCGCTGGCCGTCGTGGACGTCGCCGAGCAGCTCGTCAAGGGCCCGCTGAGCGATCTGCGGG
TGGAGGTGCTGCACGGGCGGATGCAGCCCGAGGCCAAGGACGAGGTGATGCGCCGCTTCGCCGCGGGCGAGGTGGACGTC
CTGGTCGCCACGACCGTCATCGAGGTCGGTGTGAACGTGCCGAACGCCACCGCCATGGTGATCATGGACGCCGACCGGTT
CGGCGTCTCCCAGCTGCACCAGCTGCGCGGCCGCGTCGGCCGGGGCGCGGCCGCCGGGCTGTGTCTGCTGGTGACCGACA
TGCCCGAGGGCAGCCCCGCCCGGGCGCGGCTGGGCGCGGTCGCGGCCACGTTCGACGGCTTCGAGCTGTCCCGGATCGAC
CTGGAGCAGCGCCGGGAGGGCGATGTGCTCGGCCAGGCCCAGTCCGGGGTCCGCTCCTCGCTGCGGGTGCTCGCCGTCAT
CGACGACGAGGAGGTCATCGCGGCGGCCCGGGAGGAGGCGGCCGCGATCGTGGCCGCCGATCCGGAGCTGACCGGATACC
CGCAGCTGCGCACCGCGCTGGACGCCCTGCTGGACAAGGAGCGCGCGGAGTTCCTCGACAAGGGCTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(531-602)

OB-fold nucleic acid binding domain (tRNA_anti-codon)

(39-116)

DEAD/DEAH box helicase (DEAD)

(277-429)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(630-691)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

38.02

97.483

0.371

Multiple sequence alignment