Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   ACJX2R_RS29365 Genome accession   NZ_CP178360
Coordinates   6990829..6992253 (-) Length   474 a.a.
NCBI ID   WP_413102605.1    Uniprot ID   -
Organism   Streptomyces sp. Inha503     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6985829..6997253
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJX2R_RS29345 (ACJX2R_29420) - 6985881..6987185 (+) 1305 WP_413102602.1 MFS transporter -
  ACJX2R_RS29350 (ACJX2R_29425) - 6987182..6988159 (+) 978 WP_413102603.1 dihydrodipicolinate synthase family protein -
  ACJX2R_RS29355 (ACJX2R_29430) - 6988156..6989292 (+) 1137 WP_413102604.1 mandelate racemase/muconate lactonizing enzyme family protein -
  ACJX2R_RS29360 (ACJX2R_29435) disA 6989411..6990469 (-) 1059 WP_044581604.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  ACJX2R_RS29365 (ACJX2R_29440) radA/sms 6990829..6992253 (-) 1425 WP_413102605.1 DNA repair protein RadA Machinery gene
  ACJX2R_RS29370 (ACJX2R_29445) - 6992444..6994156 (+) 1713 WP_413102606.1 sigma-70 family RNA polymerase sigma factor -
  ACJX2R_RS29375 (ACJX2R_29450) - 6995004..6995987 (-) 984 WP_413102607.1 hypothetical protein -
  ACJX2R_RS29380 (ACJX2R_29455) - 6996171..6997100 (+) 930 WP_413102608.1 Ppx/GppA family phosphatase -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 49990.96 Da        Isoelectric Point: 7.1774

>NTDB_id=971437 ACJX2R_RS29365 WP_413102605.1 6990829..6992253(-) (radA/sms) [Streptomyces sp. Inha503]
MAARSSSRSSAKDRPSYRCTECGWTTAKWLGRCPECQAWGTVEEYGAPAVRTTAPGRVTSAALPIGQVDGRQATARGTGV
DELDRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASEEHRTLYITGEESASQVRLRADRIGALSEHLYLAAETDLS
AVLGHLDSVKPSLLVLDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVV
LHFEGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRDEPVPGTCLTVTLEGRRPLVAEVQALTVD
SQIPSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLSEPAADLAVALALASAASDTPLPKNLVAIGE
VGLAGEVRRVTGVQRRLAEAARLGFTHALVPGDPGRIPDGMRVLEVADIGDALRVLPRRRERGEKARVEADDRS

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=971437 ACJX2R_RS29365 WP_413102605.1 6990829..6992253(-) (radA/sms) [Streptomyces sp. Inha503]
ATGGCTGCCCGTAGCTCCTCCCGCTCATCCGCCAAGGACCGGCCCTCCTACCGCTGTACGGAGTGCGGCTGGACCACCGC
CAAGTGGCTCGGCCGCTGCCCGGAGTGCCAGGCGTGGGGCACCGTCGAGGAGTACGGGGCGCCCGCGGTGCGCACCACCG
CACCCGGCCGGGTCACCTCGGCCGCCCTGCCCATCGGCCAGGTGGACGGCCGTCAGGCGACCGCGCGGGGCACGGGCGTG
GACGAGCTGGACCGGGTGCTCGGCGGCGGGCTGGTCCCGGGCGCGGTCGTGCTGCTCGCCGGGGAGCCCGGGGTCGGCAA
GTCCACGCTGCTGCTTGACGTGGCGGCCAAGGCCGCCTCCGAGGAGCACCGCACGCTCTACATCACCGGTGAGGAGTCGG
CGAGCCAGGTGCGGCTGCGCGCCGACCGCATCGGCGCGCTGAGCGAGCACCTCTACCTCGCCGCCGAGACCGACCTCTCC
GCGGTCCTCGGCCACCTCGACTCGGTCAAGCCCTCGCTGCTCGTCCTGGACTCGGTGCAGACCGTCGCCTCGCCCGAGAT
CGACGGCGCGCCGGGCGGGATGGCGCAGGTGCGCGAGGTGGCCGGGGCGCTGATCCGCGCGTCCAAGGAGCGCGGGATGT
CCACGCTGCTAGTGGGGCATGTCACCAAGGACGGCGCCATCGCCGGCCCCCGGCTGCTGGAGCATCTGGTCGATGTCGTA
CTGCACTTCGAGGGCGACCGGCACGCCCGGCTGCGGCTGGTGCGCGGGGTGAAGAACCGCTACGGGGCGACGGACGAGGT
CGGCTGCTTCGAGCTGCACGACGAGGGCATCACCGGGCTCGCCGACCCCTCCGGCCTGTTCCTCACCCGCCGCGACGAGC
CGGTGCCGGGCACGTGTCTGACGGTCACCCTGGAGGGCCGCCGGCCGCTGGTGGCCGAGGTGCAGGCGCTCACCGTGGAC
TCCCAGATCCCCTCGCCGCGCCGCACCACCTCCGGTCTGGAGACCTCCCGGGTCTCGATGATGCTGGCCGTGCTGGAGCA
GCGCGGCCGGATCAGCGCGCTGGGCAAGCGGGACATCTACAGCGCCACGGTGGGCGGCGTGAAGCTGTCCGAGCCCGCCG
CTGACCTCGCCGTGGCGCTCGCGCTGGCCAGCGCCGCCAGTGACACCCCGCTGCCGAAGAACCTGGTGGCGATCGGCGAG
GTCGGGCTCGCGGGCGAGGTCCGGCGGGTCACCGGGGTGCAGCGGCGGCTGGCGGAGGCGGCCCGGCTCGGCTTCACCCA
CGCCCTGGTGCCGGGCGACCCGGGCCGGATCCCGGACGGGATGCGGGTGCTGGAGGTCGCGGACATCGGAGACGCGCTGC
GGGTGCTGCCGCGGCGCCGGGAGCGGGGTGAGAAGGCACGGGTGGAGGCGGACGACCGGAGCTGA

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(17-44)

Subunit ChlI of Mg-chelatase (ChlI)

(372-431)

AAA domain (AAA_25)

(86-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

44.15

95.57

0.422
  radA Streptococcus mitis NCTC 12261

42.605

95.57

0.407
  radA Streptococcus pneumoniae D39

42.667

94.937

0.405
  radA Streptococcus pneumoniae TIGR4

42.667

94.937

0.405
  radA Streptococcus pneumoniae R6

42.667

94.937

0.405
  radA Streptococcus pneumoniae Rx1

42.667

94.937

0.405
  radA Streptococcus mitis SK321

43.897

89.873

0.395