Detailed information
Bioinformatically predicted
Overview
| Name | fimT | Type | Machinery gene |
| Locus tag | ACKWDP_RS16330 | Genome accession | NZ_CP178354 |
| Coordinates | 3364239..3364754 (+) | Length | 171 a.a. |
| NCBI ID | WP_000477151.1 | Uniprot ID | V5VA61 |
| Organism | Acinetobacter baumannii strain A297 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3359239..3369754
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACKWDP_RS16310 (ACKWDP_16310) | - | 3359570..3361030 (+) | 1461 | WP_000004974.1 | amino acid permease | - |
| ACKWDP_RS16315 (ACKWDP_16315) | - | 3361308..3362513 (+) | 1206 | WP_000512708.1 | RtcB family protein | - |
| ACKWDP_RS16320 (ACKWDP_16320) | - | 3362517..3362675 (+) | 159 | WP_000692859.1 | hypothetical protein | - |
| ACKWDP_RS16325 (ACKWDP_16325) | omp38 | 3362798..3363859 (-) | 1062 | WP_000777885.1 | outer membrane protein Omp38 | - |
| ACKWDP_RS16330 (ACKWDP_16330) | fimT | 3364239..3364754 (+) | 516 | WP_000477151.1 | GspH/FimT family pseudopilin | Machinery gene |
| ACKWDP_RS16335 (ACKWDP_16335) | - | 3364863..3366038 (+) | 1176 | WP_000129968.1 | thiolase family protein | - |
| ACKWDP_RS16340 (ACKWDP_16340) | - | 3366165..3366608 (+) | 444 | WP_001176585.1 | VOC family protein | - |
| ACKWDP_RS16345 (ACKWDP_16345) | - | 3366651..3367004 (-) | 354 | WP_000457783.1 | DMT family transporter | - |
| ACKWDP_RS16350 (ACKWDP_16350) | - | 3367087..3367572 (-) | 486 | WP_000935247.1 | DUF934 domain-containing protein | - |
| ACKWDP_RS16355 (ACKWDP_16355) | - | 3367565..3369208 (-) | 1644 | WP_000281764.1 | nitrite/sulfite reductase | - |
Sequence
Protein
Download Length: 171 a.a. Molecular weight: 19606.86 Da Isoelectric Point: 8.8196
>NTDB_id=971356 ACKWDP_RS16330 WP_000477151.1 3364239..3364754(+) (fimT) [Acinetobacter baumannii strain A297]
MFKSPGFTIVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NRVISFVDNNRNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGSSGLPIESNGSFIYCSYDQLKNFKLILSKM
GHVRLEELKNC
MFKSPGFTIVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NRVISFVDNNRNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGSSGLPIESNGSFIYCSYDQLKNFKLILSKM
GHVRLEELKNC
Nucleotide
Download Length: 516 bp
>NTDB_id=971356 ACKWDP_RS16330 WP_000477151.1 3364239..3364754(+) (fimT) [Acinetobacter baumannii strain A297]
ATGTTTAAATCTCCTGGTTTTACTATAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGCATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTTCTTTGTCCAAGTTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCGTAATCAGCTTTGTAGATAATAACCGTAATCTACAACATGATTTAAATGAAGAATTATTGACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAGTTCTGGAT
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGCCATGTGCGCTTAGAAGAGCTTAAAAATTGTTAG
ATGTTTAAATCTCCTGGTTTTACTATAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGCATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTTCTTTGTCCAAGTTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCGTAATCAGCTTTGTAGATAATAACCGTAATCTACAACATGATTTAAATGAAGAATTATTGACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAGTTCTGGAT
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGCCATGTGCGCTTAGAAGAGCTTAAAAATTGTTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| fimT | Acinetobacter baylyi ADP1 |
43.976 |
97.076 |
0.427 |