Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   ACLUR6_RS09840 Genome accession   NZ_CP178250
Coordinates   2100973..2101608 (-) Length   211 a.a.
NCBI ID   WP_000264033.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain ACI     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2095973..2106608
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLUR6_RS09815 (ACLUR6_09815) - 2096029..2097009 (-) 981 WP_004747384.1 DNA polymerase III, delta' subunit -
  ACLUR6_RS09820 (ACLUR6_09820) kdsB 2097021..2097782 (-) 762 WP_000680696.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ACLUR6_RS09825 (ACLUR6_09825) lpxK 2097792..2098802 (-) 1011 WP_168726287.1 tetraacyldisaccharide 4'-kinase -
  ACLUR6_RS09830 (ACLUR6_09830) msbA 2098805..2100532 (-) 1728 WP_001070729.1 lipid A export permease/ATP-binding protein MsbA -
  ACLUR6_RS09835 (ACLUR6_09835) - 2100529..2100957 (-) 429 WP_000669684.1 ExbD/TolR family protein -
  ACLUR6_RS09840 (ACLUR6_09840) exbB 2100973..2101608 (-) 636 WP_000264033.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  ACLUR6_RS09845 (ACLUR6_09845) - 2101658..2102545 (-) 888 WP_000023429.1 ParB/RepB/Spo0J family partition protein -
  ACLUR6_RS09850 (ACLUR6_09850) - 2102542..2103324 (-) 783 WP_017816455.1 ParA family protein -
  ACLUR6_RS09855 (ACLUR6_09855) rsmG 2103346..2103978 (-) 633 WP_000553193.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  ACLUR6_RS09860 (ACLUR6_09860) murU 2104066..2104755 (-) 690 WP_168726288.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  ACLUR6_RS09865 (ACLUR6_09865) - 2104755..2105768 (-) 1014 WP_168726289.1 aminoglycoside phosphotransferase family protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23223.15 Da        Isoelectric Point: 6.4861

>NTDB_id=971185 ACLUR6_RS09840 WP_000264033.1 2100973..2101608(-) (exbB) [Acinetobacter baumannii strain ACI]
MWELVKAGGWLMLPLILCSILTVAISIERFVRLRRSQVLPKVLMNDGSADISVVIINLEQDNNAQSTALGNILKAGFEHQ
EHGEQFARAQMEAMASQEISYLEKNINFLGTLSAIAPLLGLLGTVVGIIESFLVIDFGSAGSPSLMIPGISKALITTAVG
MLIAIPALISYRYFQRVVQDYIAELEQQSTLFHASLFYKRSSVMQEHRRVG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=971185 ACLUR6_RS09840 WP_000264033.1 2100973..2101608(-) (exbB) [Acinetobacter baumannii strain ACI]
ATGTGGGAACTTGTGAAAGCGGGCGGCTGGTTAATGCTGCCTTTAATTTTGTGTTCAATTTTAACCGTCGCAATTAGTAT
TGAGCGTTTTGTACGTTTAAGACGTTCACAAGTTTTACCTAAAGTACTAATGAATGATGGCAGTGCAGATATTTCTGTTG
TCATAATAAATTTGGAACAGGATAATAATGCGCAAAGCACGGCATTGGGCAATATTCTAAAAGCTGGTTTTGAGCATCAG
GAACATGGCGAACAATTTGCTCGAGCACAAATGGAAGCCATGGCTTCTCAAGAAATTTCTTATTTAGAAAAAAATATTAA
CTTCTTAGGGACCTTAAGTGCTATAGCGCCTCTACTAGGGCTGCTTGGAACAGTTGTGGGAATTATTGAGTCTTTTTTGG
TTATTGATTTTGGTTCGGCAGGTAGTCCTAGTTTAATGATTCCCGGTATTTCCAAGGCTTTGATCACAACAGCAGTTGGT
ATGCTCATTGCAATTCCTGCACTTATTTCCTATCGATATTTTCAAAGAGTAGTGCAAGATTATATTGCTGAGTTAGAGCA
ACAATCTACGCTATTTCATGCCTCATTGTTTTACAAACGTTCTTCAGTCATGCAAGAACATCGCCGCGTTGGTTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

42.932

90.521

0.389