Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   WHD54_RS06240 Genome accession   NZ_CP150668
Coordinates   1434315..1435676 (+) Length   453 a.a.
NCBI ID   WP_088324265.1    Uniprot ID   -
Organism   Polaribacter tangerinus strain MCCC 1H00163     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1429315..1440676
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHD54_RS06215 - 1429525..1431120 (-) 1596 WP_158211821.1 DUF4270 family protein -
  WHD54_RS06220 - 1431131..1431940 (-) 810 WP_088324269.1 glycogen/starch synthase -
  WHD54_RS06225 panC 1432038..1432892 (+) 855 WP_088324268.1 pantoate--beta-alanine ligase -
  WHD54_RS06230 panD 1432913..1433263 (+) 351 WP_088324267.1 aspartate 1-decarboxylase -
  WHD54_RS06235 - 1433296..1434207 (+) 912 WP_233131004.1 lysylphosphatidylglycerol synthase transmembrane domain-containing protein -
  WHD54_RS06240 radA 1434315..1435676 (+) 1362 WP_088324265.1 DNA repair protein RadA Machinery gene
  WHD54_RS06245 - 1435790..1436536 (-) 747 WP_088324264.1 uroporphyrinogen-III synthase -
  WHD54_RS06250 - 1437276..1438004 (+) 729 WP_088324262.1 polyprenol monophosphomannose synthase -
  WHD54_RS06255 - 1438004..1439341 (+) 1338 WP_088324261.1 dihydroorotase -
  WHD54_RS06260 - 1439344..1439799 (+) 456 WP_088324260.1 DUF4296 domain-containing protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49553.14 Da        Isoelectric Point: 7.6601

>NTDB_id=971108 WHD54_RS06240 WP_088324265.1 1434315..1435676(+) (radA) [Polaribacter tangerinus strain MCCC 1H00163]
MAKTKTTFFCQNCGTQHAKWVGQCGACKEWNTIVEEIIQKEEKRVWKQSTSAKQHINKPLKIADIVLNPEERIITNNKEL
DTVLGGGLVKGSVTLLGGEPGIGKSTLLLQVALNISQKVLYVSGEESQSQIKMRAERLDDKNSNCLILTETNTQQIFKNI
EETAPEVLVIDSIQTLHTNNIEASPGSISQIRETSAELIKFAKETATPVLLIGHINKEGNIAGPKILEHMVDVVLQFEGD
RNHTYRILRSQKNRFGSTSELGIYEMLSNGLREISNPSEILISKKDADLSGTAIASTLEGIRPLMIEIQSLVSTAVYGTP
QRSTTGYNLKRLNMILAVLEKRAGFKLGAKDVFLNITGGINVDDPAIDLAVVAAILSSNQDIAINPNVCFAAEVGLAGEI
RPVSKIDQRILEAEKLGYKTFVASKYNKISAKNLAIKLVLVGKIEEAFATLFA

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=971108 WHD54_RS06240 WP_088324265.1 1434315..1435676(+) (radA) [Polaribacter tangerinus strain MCCC 1H00163]
ATGGCTAAAACTAAAACGACTTTTTTCTGTCAGAACTGTGGTACTCAACATGCAAAATGGGTAGGACAATGTGGCGCTTG
TAAAGAATGGAATACTATCGTTGAAGAAATTATTCAAAAAGAAGAAAAAAGAGTTTGGAAACAGTCTACCTCTGCAAAAC
AGCATATAAACAAACCTCTTAAAATTGCAGATATTGTTCTTAATCCAGAAGAGAGAATTATAACTAATAATAAAGAATTA
GACACTGTTTTAGGTGGTGGCTTAGTAAAAGGTTCTGTTACCCTTTTGGGAGGTGAGCCAGGTATTGGAAAATCTACATT
ATTGCTTCAAGTAGCCCTAAATATTAGTCAGAAAGTTTTGTATGTTTCTGGAGAGGAAAGTCAGTCTCAAATAAAAATGA
GAGCCGAAAGATTAGACGATAAAAACTCTAATTGTTTAATACTTACAGAAACAAATACACAGCAAATTTTTAAAAATATT
GAAGAAACAGCTCCAGAAGTTTTAGTTATAGACTCTATACAAACACTCCATACAAATAACATCGAGGCTTCTCCTGGAAG
CATTTCTCAAATTAGAGAAACAAGTGCAGAATTGATAAAATTTGCTAAAGAAACGGCAACTCCTGTTTTATTAATTGGTC
ATATTAATAAAGAAGGTAACATTGCTGGACCAAAAATTTTAGAACATATGGTAGATGTAGTTTTACAGTTTGAAGGAGAT
AGAAATCATACCTATAGAATTTTAAGAAGTCAGAAAAACCGATTCGGTTCAACATCTGAACTAGGTATTTACGAAATGTT
ATCTAACGGACTAAGAGAAATTTCTAATCCTTCTGAAATATTAATTTCTAAGAAGGATGCCGATTTAAGTGGAACGGCTA
TTGCCTCTACTTTAGAAGGGATAAGACCTCTAATGATAGAAATTCAATCTTTAGTTTCTACCGCAGTTTATGGGACTCCG
CAACGCTCTACAACAGGTTATAATTTAAAACGGTTAAATATGATATTGGCAGTTTTAGAAAAAAGAGCAGGTTTTAAATT
GGGTGCAAAAGATGTTTTTTTAAATATTACTGGTGGTATAAATGTAGATGATCCTGCGATAGATTTGGCTGTAGTTGCAG
CTATTTTATCTTCAAACCAAGATATTGCCATTAATCCAAACGTATGCTTTGCTGCAGAAGTAGGTTTGGCAGGTGAAATA
AGACCGGTTTCTAAAATTGACCAACGAATACTAGAGGCCGAAAAACTAGGTTATAAAACTTTTGTAGCCTCTAAATACAA
CAAAATAAGTGCTAAAAATTTAGCTATTAAATTAGTACTAGTAGGTAAAATTGAAGAGGCTTTTGCTACATTATTTGCTT
AA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)

Subunit ChlI of Mg-chelatase (ChlI)

(335-427)

AAA domain (AAA_25)

(69-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.018

100

0.481
  radA Streptococcus pneumoniae Rx1

47.702

100

0.481
  radA Streptococcus pneumoniae D39

47.702

100

0.481
  radA Streptococcus pneumoniae R6

47.702

100

0.481
  radA Streptococcus pneumoniae TIGR4

47.702

100

0.481
  radA Streptococcus mitis SK321

47.484

100

0.479
  radA Streptococcus mitis NCTC 12261

47.484

100

0.479

Multiple sequence alignment