Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   WHD07_RS10245 Genome accession   NZ_CP150665
Coordinates   2407822..2409183 (+) Length   453 a.a.
NCBI ID   WP_343328306.1    Uniprot ID   -
Organism   Polaribacter staleyi strain KCTC 52773     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2402822..2414183
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHD07_RS10220 - 2402890..2404449 (-) 1560 WP_343328303.1 DUF4270 family protein -
  WHD07_RS10225 - 2404462..2405271 (-) 810 WP_105049877.1 glycogen/starch synthase -
  WHD07_RS10230 panC 2405369..2406217 (+) 849 WP_343328304.1 pantoate--beta-alanine ligase -
  WHD07_RS10235 panD 2406246..2406596 (+) 351 WP_036825265.1 aspartate 1-decarboxylase -
  WHD07_RS10240 - 2406598..2407542 (+) 945 WP_343328305.1 lysylphosphatidylglycerol synthase transmembrane domain-containing protein -
  WHD07_RS10245 radA 2407822..2409183 (+) 1362 WP_343328306.1 DNA repair protein RadA Machinery gene
  WHD07_RS10250 - 2409180..2409560 (-) 381 WP_343328307.1 VOC family protein -
  WHD07_RS10255 - 2409567..2410571 (-) 1005 WP_105049872.1 sugar kinase -
  WHD07_RS10260 - 2410751..2411497 (-) 747 WP_343328308.1 uroporphyrinogen-III synthase -
  WHD07_RS10265 - 2412239..2412961 (+) 723 WP_105049869.1 polyprenol monophosphomannose synthase -
  WHD07_RS10270 - 2412969..2413430 (+) 462 WP_343328309.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49402.80 Da        Isoelectric Point: 7.3271

>NTDB_id=971081 WHD07_RS10245 WP_343328306.1 2407822..2409183(+) (radA) [Polaribacter staleyi strain KCTC 52773]
MAKTKTTFFCQNCGTQHAKWVGQCGACKEWNTIVEEVIQKEEKRVWKQSTTAKQTINKPLKVADIQLNPEERIVTNNNEL
DTVLGGGLVKGSVTLLGGEPGIGKSTLLLQVALNISQKVLYVSGEESQSQIKMRAERLEANNSNCLILTETNTQNIFKSI
EETMPEVLVIDSIQTLHTSSIEASPGTISQIRETAAELIKYAKETATPVLLIGHINKDGNIAGPKILEHMVDVVLQFEGD
RNHTYRILRSQKNRFGSTSELGIYEMLSNGLREISNPSEILISKKDADLSGTAIASTLEGIRPLMIEIQALVSTAVYGTP
QRSTTGYNLKRLNMILAVLEKRAGFKLGAKDVFLNITGGINVDDPAIDLAVVAAILSSNQDVAINPNVCFAAEVGLAGEI
RPVSKIDQRITEAEKLGYKTLVASKYNKISSKNHGIRLVLVGKIEEAFATLFA

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=971081 WHD07_RS10245 WP_343328306.1 2407822..2409183(+) (radA) [Polaribacter staleyi strain KCTC 52773]
ATGGCTAAAACCAAAACAACTTTTTTCTGTCAGAATTGTGGAACTCAACATGCAAAATGGGTGGGACAATGTGGAGCCTG
TAAAGAATGGAACACCATTGTAGAAGAAGTAATACAAAAAGAGGAAAAACGAGTTTGGAAACAATCTACAACCGCAAAAC
AAACCATAAACAAGCCATTAAAAGTTGCAGACATTCAGCTAAATCCAGAAGAAAGAATTGTAACCAATAATAACGAATTA
GACACCGTTCTTGGTGGCGGATTGGTAAAAGGCTCGGTAACACTTTTAGGAGGAGAACCTGGTATTGGTAAATCTACTTT
ATTATTACAAGTTGCCTTAAACATCAGCCAAAAAGTATTGTATGTTTCTGGAGAAGAAAGTCAGTCTCAAATAAAAATGA
GAGCAGAAAGGTTAGAAGCCAACAACTCTAACTGTTTAATTTTAACAGAAACCAATACTCAAAATATTTTTAAAAGCATA
GAAGAGACCATGCCAGAAGTTTTGGTAATCGATTCTATACAAACACTACACACAAGCTCCATAGAAGCCTCTCCCGGAAC
TATTTCTCAAATAAGAGAAACTGCTGCAGAATTGATTAAATATGCCAAAGAAACCGCTACCCCGGTTTTATTAATCGGAC
ACATCAATAAAGATGGAAACATTGCCGGACCCAAAATTTTAGAACACATGGTAGATGTTGTTTTACAATTTGAAGGAGAC
AGAAACCATACTTACAGAATATTACGAAGCCAAAAAAACAGATTCGGCTCAACATCAGAATTAGGAATTTACGAAATGCT
TTCTAACGGATTAAGAGAAATCTCTAATCCGTCTGAAATATTAATTTCTAAGAAAGACGCAGATTTAAGCGGAACCGCAA
TTGCAAGCACTTTAGAAGGTATTAGACCTTTAATGATAGAAATACAAGCCCTGGTTTCTACCGCAGTTTACGGAACACCT
CAACGCTCTACAACAGGTTATAATTTAAAAAGATTAAACATGATTTTAGCGGTTCTAGAAAAAAGAGCTGGTTTTAAATT
AGGTGCAAAAGATGTCTTTTTAAATATCACCGGAGGCATAAATGTAGATGATCCGGCAATAGATTTAGCCGTTGTTGCTG
CAATTTTATCTTCTAACCAAGATGTTGCCATTAACCCAAATGTTTGTTTTGCTGCAGAAGTTGGTTTGGCAGGAGAAATA
AGACCTGTTTCTAAAATAGACCAAAGAATTACAGAAGCAGAAAAATTAGGTTACAAAACTTTAGTTGCTTCTAAATACAA
TAAGATTTCTTCTAAAAACCACGGAATAAGATTGGTTTTAGTTGGCAAAATAGAAGAAGCTTTTGCTACTTTGTTTGCTT
AA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)

AAA domain (AAA_25)

(71-219)

Subunit ChlI of Mg-chelatase (ChlI)

(331-427)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.458

100

0.486
  radA Streptococcus mitis NCTC 12261

47.484

100

0.479
  radA Streptococcus pneumoniae Rx1

47.484

100

0.479
  radA Streptococcus pneumoniae TIGR4

47.484

100

0.479
  radA Streptococcus pneumoniae D39

47.484

100

0.479
  radA Streptococcus pneumoniae R6

47.484

100

0.479
  radA Streptococcus mitis SK321

47.265

100

0.477

Multiple sequence alignment