Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   ACLFAM_RS09150 Genome accession   NZ_CP178226
Coordinates   1803489..1805717 (+) Length   742 a.a.
NCBI ID   WP_039114766.1    Uniprot ID   -
Organism   Lactococcus lactis strain L-WY410     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1798489..1810717
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLFAM_RS09115 (ACLFAM_09115) - 1798980..1799648 (+) 669 WP_023189600.1 hypothetical protein -
  ACLFAM_RS09120 (ACLFAM_09120) - 1799818..1800714 (+) 897 WP_003129543.1 SPFH domain-containing protein -
  ACLFAM_RS09130 (ACLFAM_09130) - 1801089..1801349 (+) 261 WP_003129544.1 SemiSWEET family transporter -
  ACLFAM_RS09140 (ACLFAM_09140) rnz 1801706..1802629 (+) 924 WP_039114762.1 ribonuclease Z -
  ACLFAM_RS09145 (ACLFAM_09145) - 1802622..1803323 (+) 702 WP_039114764.1 SDR family NAD(P)-dependent oxidoreductase -
  ACLFAM_RS09150 (ACLFAM_09150) recJ 1803489..1805717 (+) 2229 WP_039114766.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  ACLFAM_RS09155 (ACLFAM_09155) - 1805840..1806352 (+) 513 WP_012897343.1 adenine phosphoribosyltransferase -
  ACLFAM_RS09160 (ACLFAM_09160) rpoE 1806569..1807132 (+) 564 WP_012897344.1 DNA-directed RNA polymerase subunit delta -
  ACLFAM_RS09165 (ACLFAM_09165) mltG 1807269..1808922 (+) 1654 Protein_1747 endolytic transglycosylase MltG -
  ACLFAM_RS09170 (ACLFAM_09170) greA 1808982..1809455 (+) 474 WP_025016857.1 transcription elongation factor GreA -
  ACLFAM_RS09175 (ACLFAM_09175) - 1809632..1810087 (+) 456 WP_010905471.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 742 a.a.        Molecular weight: 83426.56 Da        Isoelectric Point: 4.7781

>NTDB_id=971047 ACLFAM_RS09150 WP_039114766.1 1803489..1805717(+) (recJ) [Lactococcus lactis strain L-WY410]
MIKAKYDWKVADTAISEDFLKIAKKHKLDELTSRVLYQRGVHAEAEIEQFLKPSLENLHDPFLLHDMEKATGRILSAIEQ
GENILIYGDYDADGMTAASVMKSALDELGAEAQVYLPNRFTDGYGPNLDVYQYYIKNENINLIITVDNGVAGLEAITWAQ
ENGVDVIVTDHHSIPDQLPPAYAIVHPEHPDSQYPFKYLAGVGVAFKVACALLEYAPSEMLDLVAIGTIADMVSLTDENR
ILVAHGLKVLAQTERAGLQELMKYAGVDFDKITEETVGFQIAPRLNALGRLDDPNAAIELLTGWDEDEAHEIAKMIDQKN
SERKEIVEKIHNEALSMLTDEPIQILYHKDWHKGVLGIVAGRLLEAIHKPVIMLAQEEGILRGSARSIENFDIFKALNAH
RELFIAFGGHKQAAGMTLSLGNVEAVKKAMIDYIVDNHLDMSKKSPLEIADRCHLDDISLSTITNLAKLAPFGMDNPKPR
FLIEDYKVIQSRSMGKDNAHLKLKIQEEKQQIDAVYFQHGSEELEFEQAQTKLVATLSSNSWNGNTSLQLMIEDADSVGV
ELLDIRSKQLPIPKEANIFSQNQLKHGIMEDVLVIEETPGDLAGLSVLKEAVSKAASDDFKMIYFKNKITDSYYLTGSGT
REEFARLYKAIYQFPEFDIRYKLKSLADYLKIPHLLLVKMIKIFEELEFVSIDNGLMTVNKTADKREISESTIYQELEKI
VKMQELFALAPVKEIYQNLLEK

Nucleotide


Download         Length: 2229 bp        

>NTDB_id=971047 ACLFAM_RS09150 WP_039114766.1 1803489..1805717(+) (recJ) [Lactococcus lactis strain L-WY410]
ATGATAAAAGCAAAATATGATTGGAAAGTGGCTGATACAGCCATTTCCGAAGATTTTCTAAAGATAGCGAAAAAACATAA
ATTAGATGAATTGACAAGTCGCGTGCTTTATCAAAGAGGAGTTCATGCAGAAGCTGAAATTGAGCAATTTTTAAAGCCAA
GTTTAGAAAATTTACATGACCCTTTTCTACTTCATGATATGGAAAAAGCAACAGGGCGTATTTTATCAGCAATTGAGCAA
GGTGAAAATATCTTAATTTATGGTGACTATGATGCTGACGGAATGACTGCAGCATCAGTCATGAAGTCCGCTCTGGATGA
ATTAGGAGCTGAGGCTCAAGTTTATTTACCCAATCGTTTTACTGACGGTTACGGGCCAAATCTTGACGTTTATCAGTACT
ATATTAAGAATGAAAATATCAATCTTATTATTACTGTAGATAATGGGGTTGCTGGCTTGGAGGCAATTACCTGGGCACAG
GAAAATGGAGTGGATGTAATTGTTACCGACCATCACTCAATTCCTGACCAACTTCCCCCTGCTTATGCCATTGTCCACCC
CGAACATCCTGACAGTCAATATCCTTTCAAATATTTGGCAGGAGTTGGTGTCGCCTTCAAAGTTGCCTGTGCTCTTTTAG
AATATGCACCCAGTGAAATGCTTGATTTAGTTGCAATTGGTACAATTGCTGACATGGTCAGTTTGACTGATGAAAACCGA
ATTTTAGTGGCTCATGGTCTAAAAGTTTTGGCCCAAACAGAGCGTGCCGGCCTACAAGAATTAATGAAGTATGCTGGGGT
TGATTTTGATAAAATCACTGAGGAAACGGTTGGTTTTCAAATTGCTCCCCGTTTAAACGCTTTGGGACGTCTCGATGACC
CAAACGCAGCCATTGAATTGCTGACAGGTTGGGATGAAGATGAAGCGCATGAAATTGCCAAAATGATTGACCAAAAAAAT
TCAGAGCGAAAAGAAATTGTGGAAAAAATTCACAATGAAGCTCTGAGTATGCTGACAGATGAACCTATTCAGATTTTATA
TCATAAGGACTGGCATAAAGGTGTCTTAGGAATTGTTGCGGGTCGCTTGTTAGAAGCCATACATAAGCCAGTAATCATGC
TGGCCCAAGAAGAGGGGATTTTGCGTGGGTCTGCTCGGTCAATCGAAAATTTTGATATTTTCAAGGCATTAAATGCCCAT
CGTGAACTTTTTATTGCTTTTGGTGGTCATAAACAAGCCGCAGGGATGACTTTAAGTCTGGGAAACGTAGAAGCAGTTAA
AAAGGCGATGATTGATTATATCGTGGATAATCATTTAGATATGTCTAAAAAAAGTCCCTTAGAAATTGCTGACCGTTGCC
ACTTAGACGATATTTCGCTCTCAACAATCACTAATTTAGCAAAATTGGCTCCCTTTGGCATGGATAATCCTAAGCCTCGA
TTTTTAATCGAAGATTATAAGGTGATTCAAAGCCGAAGTATGGGGAAAGACAATGCTCATCTTAAATTAAAAATTCAGGA
AGAAAAGCAACAAATTGATGCCGTTTATTTCCAACATGGTTCAGAAGAATTGGAATTCGAACAGGCACAAACAAAATTAG
TCGCAACACTTTCAAGTAATAGTTGGAATGGAAATACGAGTCTTCAATTAATGATTGAAGATGCTGATTCAGTTGGTGTC
GAACTTCTTGATATAAGAAGTAAACAACTTCCTATCCCAAAAGAGGCTAATATTTTTTCTCAAAATCAGCTAAAACATGG
TATAATGGAAGATGTGCTTGTCATCGAAGAGACACCTGGAGATTTAGCAGGTTTGTCAGTATTAAAAGAAGCTGTCAGTA
AAGCAGCGTCGGATGATTTTAAAATGATTTATTTTAAAAATAAAATCACTGATAGCTATTATTTAACAGGAAGTGGAACA
CGAGAAGAATTTGCAAGACTTTATAAAGCAATTTATCAATTTCCAGAATTTGATATTCGCTATAAATTAAAATCACTTGC
GGATTATTTGAAAATCCCTCATCTCTTGCTTGTCAAGATGATAAAAATCTTTGAGGAACTTGAATTTGTCAGCATTGACA
ATGGCTTAATGACTGTTAATAAGACGGCCGATAAACGCGAAATTTCTGAGAGTACAATTTATCAAGAACTAGAAAAAATT
GTAAAAATGCAAGAACTTTTTGCTTTAGCACCCGTCAAAGAAATTTATCAAAATTTATTAGAAAAATAA

Domains

Predicted by InterProScan.

DHHA1 domain (DHHA1)

(317-434)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(592-737)

DHH family (DHH)

(83-228)

RecJ OB domain (RecJ_OB)

(454-554)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Streptococcus pneumoniae strain D39V

56.376

100

0.566
  recJ Bacillus subtilis subsp. subtilis str. 168

36.457

100

0.383