Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   UXR81_RS08490 Genome accession   NZ_CP150651
Coordinates   1714337..1715311 (-) Length   324 a.a.
NCBI ID   WP_000697220.1    Uniprot ID   W8U5L8
Organism   Staphylococcus aureus strain BSN213     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1709337..1720311
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UXR81_RS08450 (UXR81_08470) gcvT 1709838..1710929 (-) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  UXR81_RS08455 (UXR81_08475) - 1711088..1711612 (-) 525 WP_001015120.1 shikimate kinase -
  UXR81_RS08460 (UXR81_08480) - 1711602..1711748 (-) 147 WP_001792109.1 hypothetical protein -
  UXR81_RS08465 (UXR81_08485) comGF 1711845..1712342 (-) 498 WP_001788897.1 competence type IV pilus minor pilin ComGF Machinery gene
  UXR81_RS08470 (UXR81_08490) comGE 1712260..1712559 (-) 300 WP_000844410.1 hypothetical protein Machinery gene
  UXR81_RS08475 (UXR81_08495) comGD 1712546..1712992 (-) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  UXR81_RS08480 (UXR81_08500) comGC 1712970..1713281 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  UXR81_RS08485 (UXR81_08505) comGB 1713295..1714365 (-) 1071 WP_000776422.1 competence type IV pilus assembly protein ComGB Machinery gene
  UXR81_RS08490 (UXR81_08510) comGA 1714337..1715311 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  UXR81_RS08495 (UXR81_08515) - 1715363..1715986 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  UXR81_RS08500 (UXR81_08520) - 1715983..1716312 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  UXR81_RS08505 (UXR81_08525) - 1716312..1717298 (-) 987 WP_000161311.1 ROK family glucokinase -
  UXR81_RS08510 (UXR81_08530) - 1717295..1717498 (-) 204 WP_000087561.1 YqgQ family protein -
  UXR81_RS08515 (UXR81_08535) - 1717479..1718942 (-) 1464 WP_339077007.1 rhomboid family intramembrane serine protease -
  UXR81_RS08520 (UXR81_08540) - 1718954..1719493 (-) 540 WP_000164546.1 5-formyltetrahydrofolate cyclo-ligase -
  UXR81_RS08525 (UXR81_08545) rpmG 1719702..1719851 (-) 150 WP_001265709.1 50S ribosomal protein L33 -

Sequence

Protein


Download         Length: 324 a.a.        Molecular weight: 36897.96 Da        Isoelectric Point: 8.8516

>NTDB_id=970971 UXR81_RS08490 WP_000697220.1 1714337..1715311(-) (comGA) [Staphylococcus aureus strain BSN213]
MKILFQEIINKAIEMKASDVHFIPVKNEVSIKFRINDNLEQYEQIGNSIYQKLLVYMKFQAGLDVSTQQVAQSGRYSYHF
NKIYFLRISTLPLSLGQESCVIRIVPQFFQQQKSTYKFNDFKHLMNKKQGLLLFSGPTGSGKSTLMYQMVSYANKALNLN
VISIEDPVEMQIPGIVQINVNDKAGINYVNSFKAILRCDPDVILIGEIRDKDVAKCVIQASLSGHLVLTTLHATDCKGAI
LRLLEMGISVQELIQATNLIINQRLVTTIKQQRQLVCEILSQQQLRYFFSHNHSLPSSFKNLEDKLDDMTKAGVICETTM
DKYI

Nucleotide


Download         Length: 975 bp        

>NTDB_id=970971 UXR81_RS08490 WP_000697220.1 1714337..1715311(-) (comGA) [Staphylococcus aureus strain BSN213]
TTGAAGATTCTATTTCAAGAAATAATTAATAAAGCGATAGAAATGAAAGCGAGTGATGTACATTTTATTCCAGTTAAAAA
TGAAGTAAGTATTAAATTTAGAATTAATGATAACTTGGAGCAGTATGAACAAATTGGGAATAGCATTTATCAAAAGTTAT
TAGTTTATATGAAGTTTCAAGCTGGGCTTGATGTTTCTACACAGCAAGTCGCACAGAGCGGTCGATATAGTTACCATTTC
AATAAAATATATTTTTTGAGAATATCAACTTTACCATTGTCACTTGGCCAAGAAAGTTGTGTTATCAGAATTGTACCTCA
ATTTTTTCAACAACAGAAATCAACTTATAAATTCAATGATTTTAAACACCTCATGAATAAGAAACAAGGATTACTATTGT
TTAGTGGGCCAACTGGTTCAGGAAAGAGTACATTAATGTATCAAATGGTCTCATACGCGAATAAAGCCTTGAATTTAAAT
GTAATTTCTATAGAGGATCCTGTAGAGATGCAAATTCCTGGTATCGTCCAAATTAATGTGAATGATAAAGCTGGCATTAA
CTATGTAAATTCGTTTAAAGCTATTTTAAGATGTGATCCTGATGTTATTTTAATAGGTGAAATCAGAGATAAAGATGTTG
CCAAGTGTGTTATACAGGCTAGTTTAAGTGGTCACCTTGTTCTGACTACATTGCATGCAACTGATTGTAAAGGTGCTATT
TTAAGGCTATTAGAAATGGGCATTTCTGTACAAGAATTGATACAGGCAACTAACTTAATTATAAACCAACGACTTGTAAC
TACTATTAAGCAACAGCGACAATTAGTATGCGAAATTCTATCTCAGCAACAACTCCGATATTTCTTTTCCCATAATCATT
CATTACCATCATCATTTAAGAACTTAGAAGATAAACTTGATGATATGACAAAAGCAGGTGTCATTTGTGAAACTACAATG
GATAAATACATTTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB W8U5L8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Staphylococcus aureus MW2

100

100

1
  comGA Staphylococcus aureus N315

100

100

1

Multiple sequence alignment