Detailed information NTG0970954

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACLKZ2_RS26185
• Genome accession: NZ_CP178225
• Coordinates: 5518478..5519482 (-)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain PA492
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 5513478..5524482

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACLKZ2_RS26170 (ACLKZ2_26170)	-	5513961..5514968 (+)	1008	WP_003092265.1	TolB family protein	-
ACLKZ2_RS26175 (ACLKZ2_26175)	mutS	5515094..5517661 (+)	2568	WP_003122151.1	DNA mismatch repair protein MutS	-
ACLKZ2_RS26180 (ACLKZ2_26180)	fdxA	5517728..5518051 (+)	324	WP_003092272.1	ferredoxin FdxA	-
ACLKZ2_RS26185 (ACLKZ2_26185)	rpoS	5518478..5519482 (-)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
ACLKZ2_RS26190 (ACLKZ2_26190)	-	5519587..5520480 (-)	894	WP_003092335.1	peptidoglycan DD-metalloendopeptidase family protein	-
ACLKZ2_RS26195 (ACLKZ2_26195)	-	5520526..5521161 (-)	636	WP_073660134.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
ACLKZ2_RS26200 (ACLKZ2_26200)	surE	5521194..5521943 (-)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
ACLKZ2_RS26205 (ACLKZ2_26205)	truD	5521931..5522998 (-)	1068	WP_003092343.1	tRNA pseudouridine(13) synthase TruD	-
ACLKZ2_RS26210 (ACLKZ2_26210)	ispF	5522995..5523468 (-)	474	WP_003092346.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ACLKZ2_RS26215 (ACLKZ2_26215)	fghA	5523539..5524390 (-)	852	WP_003092349.1	S-formylglutathione hydrolase	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=970954 ACLKZ2_RS26185 WP_003113871.1 5518478..5519482(-) (rpoS) [Pseudomonas aeruginosa strain PA492]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=970954 ACLKZ2_RS26185 WP_003113871.1 5518478..5519482(-) (rpoS) [Pseudomonas aeruginosa strain PA492]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTTAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653