Detailed information    

insolico Bioinformatically predicted

Overview


Name   mecA   Type   Regulator
Locus tag   V8V52_RS23400 Genome accession   NZ_CP150648
Coordinates   4579770..4580453 (-) Length   227 a.a.
NCBI ID   WP_002011351.1    Uniprot ID   R8DDT2
Organism   Bacillus mycoides strain 4BM1     
Function   degradation of ComK (predicted from homology)   
Competence regulation

Genomic Context


Location: 4574770..4585453
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V8V52_RS23385 (V8V52_23385) pepF 4574949..4576775 (-) 1827 WP_002140837.1 oligoendopeptidase F Regulator
  V8V52_RS23390 (V8V52_23390) - 4576826..4578061 (-) 1236 WP_088035097.1 competence protein CoiA family protein -
  V8V52_RS23395 (V8V52_23395) - 4578153..4579697 (-) 1545 WP_002064255.1 cardiolipin synthase -
  V8V52_RS23400 (V8V52_23400) mecA 4579770..4580453 (-) 684 WP_002011351.1 adaptor protein MecA Regulator
  V8V52_RS23405 (V8V52_23405) - 4580890..4581564 (+) 675 WP_088035099.1 TerC family protein -
  V8V52_RS23410 (V8V52_23410) spx 4581615..4582010 (-) 396 WP_002011348.1 transcriptional regulator Spx -
  V8V52_RS23415 (V8V52_23415) - 4582591..4582794 (+) 204 WP_000559981.1 hypothetical protein -
  V8V52_RS23420 (V8V52_23420) - 4582825..4584471 (-) 1647 WP_002140829.1 peptide ABC transporter substrate-binding protein -

Sequence


Protein


Download         Length: 227 a.a.        Molecular weight: 27029.17 Da        Isoelectric Point: 4.0116

>NTDB_id=970937 V8V52_RS23400 WP_002011351.1 4579770..4580453(-) (mecA) [Bacillus mycoides strain 4BM1]
MDIERINDHTMKFFITYIDIEDRGFNREEIWYDRERSEELFWEMMDEARDHDDFFIDGPLWIQVQAVDKGIEVLVTKAEL
SKDGQKLELPIGVDKIIDIPLDEGIESLFQQELVEEVEEQVGTNFNEDGTFGFLIKFNDFEDVISLSHRLIFEDIKDELH
SFEDRYYVYVEFDEVLHDEEEIDRILSIVLEYGEESTLTIHRVSEYGKQVVKERALETIRNNFPPKM

Nucleotide


Download         Length: 684 bp        

>NTDB_id=970937 V8V52_RS23400 WP_002011351.1 4579770..4580453(-) (mecA) [Bacillus mycoides strain 4BM1]
TTGGATATTGAAAGAATTAATGACCATACGATGAAATTTTTTATTACGTACATTGATATAGAGGACAGAGGGTTTAATCG
TGAAGAAATTTGGTATGATCGCGAACGAAGTGAAGAGCTCTTTTGGGAGATGATGGACGAAGCTCGTGATCATGATGATT
TCTTTATCGATGGGCCGTTATGGATCCAAGTGCAAGCAGTCGATAAAGGGATTGAAGTACTTGTAACGAAAGCGGAGCTT
TCAAAGGATGGACAAAAGCTGGAACTACCAATAGGTGTAGACAAAATTATAGACATTCCTCTAGATGAAGGCATCGAATC
ATTATTCCAGCAAGAATTAGTGGAAGAGGTAGAAGAACAAGTAGGAACAAACTTTAATGAAGATGGTACGTTTGGCTTTT
TAATTAAGTTTAATGATTTTGAAGATGTTATTTCATTAAGTCATCGTCTTATCTTTGAAGATATAAAAGATGAATTACAT
TCATTTGAGGACCGATATTATGTATATGTGGAATTCGATGAAGTGCTACATGATGAAGAAGAAATTGATCGTATTTTAAG
TATTGTTTTAGAATATGGAGAAGAATCTACTTTAACGATTCACCGTGTAAGTGAGTATGGGAAACAGGTTGTGAAAGAGC
GTGCGCTTGAGACAATTCGCAACAATTTCCCTCCTAAAATGTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB R8DDT2

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mecA Bacillus subtilis subsp. subtilis str. 168

54.386

100

0.546


Multiple sequence alignment