Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   V8V52_RS22975 Genome accession   NZ_CP150648
Coordinates   4500500..4500823 (+) Length   107 a.a.
NCBI ID   WP_002011473.1    Uniprot ID   A0A366GDN4
Organism   Bacillus mycoides strain 4BM1     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 4495500..4505823
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V8V52_RS22960 (V8V52_22960) - 4496018..4497385 (-) 1368 WP_088035027.1 aldehyde dehydrogenase -
  V8V52_RS22965 (V8V52_22965) inhA1 4497556..4499943 (-) 2388 WP_088035029.1 M6 family metalloprotease immune inhibitor InhA1 -
  V8V52_RS22970 (V8V52_22970) - 4500286..4500420 (+) 135 WP_002011474.1 anti-repressor SinI family protein -
  V8V52_RS22975 (V8V52_22975) sinR 4500500..4500823 (+) 324 WP_002011473.1 helix-turn-helix domain-containing protein Regulator
  V8V52_RS22980 (V8V52_22980) calY 4500906..4501499 (-) 594 WP_060751349.1 biofilm matrix protein CalY -
  V8V52_RS22985 (V8V52_22985) - 4501943..4502776 (-) 834 WP_002168858.1 DUF4047 domain-containing protein -
  V8V52_RS22990 (V8V52_22990) - 4502938..4503525 (-) 588 WP_002030432.1 CalY family protein -
  V8V52_RS22995 (V8V52_22995) - 4503590..4504159 (-) 570 WP_002064334.1 signal peptidase I -
  V8V52_RS23000 (V8V52_23000) - 4504356..4505642 (-) 1287 WP_088035031.1 D-alanyl-D-alanine carboxypeptidase family protein -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12304.07 Da        Isoelectric Point: 7.2050

>NTDB_id=970935 V8V52_RS22975 WP_002011473.1 4500500..4500823(+) (sinR) [Bacillus mycoides strain 4BM1]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTTESHLDSEWTQLV
KDAMSSGVSKEQFREFLEFTQWKKNQQ

Nucleotide


Download         Length: 324 bp        

>NTDB_id=970935 V8V52_RS22975 WP_002011473.1 4500500..4500823(+) (sinR) [Bacillus mycoides strain 4BM1]
ATGATAGGAGAACGTATAAAACGCCTTCGTTTACAAAAAGGCATTTCATTAACAGAACTCGCCGAAAAAGCTGGTGTCGC
TAAATCTTACATTAGTTCTATAGAACGGAATTTACAAAAAAACCCTTCTATTCAGTTTCTTGAAAAAATTGCAGCTGTTC
TACAAATTCCAGTTGATACTTTACTTCACGATGAAACAACAACGGAAAGTCATCTAGACTCCGAATGGACACAGCTCGTT
AAAGATGCGATGAGCTCTGGTGTCTCAAAAGAACAGTTTCGTGAATTTCTCGAATTTACACAATGGAAGAAAAATCAACA
ATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A366GDN4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

66.972

100

0.682

Multiple sequence alignment