Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   V8V52_RS21605 Genome accession   NZ_CP150648
Coordinates   4244660..4245262 (+) Length   200 a.a.
NCBI ID   WP_000155584.1    Uniprot ID   J8ATF7
Organism   Bacillus mycoides strain 4BM1     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4239660..4250262
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V8V52_RS21565 (V8V52_21565) - 4239989..4240543 (-) 555 WP_002030808.1 DUF1273 domain-containing protein -
  V8V52_RS21570 (V8V52_21570) - 4240600..4241025 (-) 426 WP_088030896.1 CotD family spore coat protein -
  V8V52_RS21575 (V8V52_21575) - 4241182..4241772 (-) 591 WP_088030895.1 YppG family protein -
  V8V52_RS21580 (V8V52_21580) - 4241950..4242141 (+) 192 WP_002030817.1 YppF family protein -
  V8V52_RS21585 (V8V52_21585) - 4242320..4242664 (-) 345 WP_002011864.1 YppE family protein -
  V8V52_RS21590 (V8V52_21590) - 4242680..4242922 (-) 243 WP_002030820.1 hypothetical protein -
  V8V52_RS21595 (V8V52_21595) - 4243041..4243187 (+) 147 WP_307838389.1 phage portal protein -
  V8V52_RS21600 (V8V52_21600) - 4243531..4244556 (-) 1026 WP_088030894.1 DUF2515 domain-containing protein -
  V8V52_RS21605 (V8V52_21605) recU 4244660..4245262 (+) 603 WP_000155584.1 Holliday junction resolvase RecU Machinery gene
  V8V52_RS21610 (V8V52_21610) - 4245329..4248079 (+) 2751 WP_088030893.1 PBP1A family penicillin-binding protein -
  V8V52_RS21615 (V8V52_21615) - 4248103..4248621 (-) 519 WP_088030892.1 YpoC family protein -
  V8V52_RS21620 (V8V52_21620) nth 4248625..4249272 (-) 648 WP_088030891.1 endonuclease III -
  V8V52_RS21625 (V8V52_21625) dnaD 4249288..4249995 (-) 708 WP_000728546.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23361.62 Da        Isoelectric Point: 9.5601

>NTDB_id=970933 V8V52_RS21605 WP_000155584.1 4244660..4245262(+) (recU) [Bacillus mycoides strain 4BM1]
MTIRYPNGKRYDQASQPHKTPIKKHTYSNRGMSLEEELNETNQYYLTHNIACVHKKPTPLQIVKVDYPARSAAVVKEAYF
KQPSTTDYNGVYKGKYIDFEAKETKNKTSFPLQNFHLHQIEHMKQVVAHNGIAFVIIKFTLFDEFYLLDAKHIIAFWNRQ
NTGGRKSITKQEIEEHGSLLSCGYHPRIDYIRVLDTVYFS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=970933 V8V52_RS21605 WP_000155584.1 4244660..4245262(+) (recU) [Bacillus mycoides strain 4BM1]
ATGACCATTCGTTACCCAAATGGAAAAAGGTACGATCAAGCTTCACAACCTCATAAAACACCAATAAAAAAACATACTTA
CAGTAATAGAGGTATGTCCCTTGAAGAGGAATTGAATGAAACCAATCAATATTACTTAACCCATAATATTGCGTGCGTAC
ATAAAAAACCTACACCTCTTCAAATTGTAAAAGTAGATTACCCCGCTCGAAGTGCTGCAGTGGTAAAAGAAGCGTATTTC
AAACAACCTTCTACAACAGATTACAACGGTGTATACAAAGGGAAATACATCGATTTTGAAGCGAAAGAAACTAAAAATAA
AACCAGTTTTCCACTTCAAAACTTCCACCTTCATCAAATTGAACATATGAAGCAAGTAGTCGCTCATAATGGAATTGCAT
TTGTTATTATTAAATTTACACTTTTTGATGAATTTTATTTATTAGATGCAAAACATATTATTGCATTTTGGAATCGTCAA
AATACTGGTGGACGTAAATCGATTACAAAACAAGAAATAGAAGAGCATGGGTCTTTATTATCATGCGGTTATCACCCTCG
AATTGATTATATCCGCGTACTAGACACGGTTTATTTTTCGTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(30-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB J8ATF7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

63

100

0.63

Multiple sequence alignment