Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   V8V52_RS19515 Genome accession   NZ_CP150648
Coordinates   3798408..3798695 (-) Length   95 a.a.
NCBI ID   WP_002012401.1    Uniprot ID   A0A366G1Y4
Organism   Bacillus mycoides strain 4BM1     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3793408..3803695
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V8V52_RS19485 (V8V52_19485) - 3793665..3794012 (+) 348 WP_002202297.1 DUF4257 domain-containing protein -
  V8V52_RS19490 (V8V52_19490) - 3794097..3794321 (+) 225 WP_140152372.1 hypothetical protein -
  V8V52_RS19495 (V8V52_19495) - 3794506..3795681 (-) 1176 WP_088032604.1 MFS transporter -
  V8V52_RS19500 (V8V52_19500) - 3795731..3796666 (-) 936 WP_088032602.1 aldo/keto reductase -
  V8V52_RS19505 (V8V52_19505) - 3796774..3797082 (+) 309 WP_002012403.1 helix-turn-helix transcriptional regulator -
  V8V52_RS19510 (V8V52_19510) - 3797123..3798073 (-) 951 WP_088032601.1 serine protease -
  V8V52_RS19515 (V8V52_19515) abrB 3798408..3798695 (-) 288 WP_002012401.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  V8V52_RS19520 (V8V52_19520) - 3798815..3800695 (-) 1881 WP_002012400.1 ABC transporter permease -
  V8V52_RS19525 (V8V52_19525) nadE 3800966..3801784 (+) 819 WP_060752123.1 ammonia-dependent NAD(+) synthetase -
  V8V52_RS19530 (V8V52_19530) - 3801829..3802290 (-) 462 WP_060752124.1 NUDIX hydrolase -
  V8V52_RS19535 (V8V52_19535) - 3802318..3802518 (-) 201 WP_002141377.1 DUF4083 domain-containing protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10647.42 Da        Isoelectric Point: 6.9795

>NTDB_id=970932 V8V52_RS19515 WP_002012401.1 3798408..3798695(-) (abrB) [Bacillus mycoides strain 4BM1]
MKATGIIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEEDKVILQKYQPYNACQITGDVSDQNISLANGNITVSIEGAK
HVIKEIEQFLNKSKI

Nucleotide


Download         Length: 288 bp        

>NTDB_id=970932 V8V52_RS19515 WP_002012401.1 3798408..3798695(-) (abrB) [Bacillus mycoides strain 4BM1]
ATGAAAGCAACAGGAATTATTCGAAAAGTAGATGAATTGGGACGGATAGTTATTCCTAAAGAATTACGGGATGTATTAGG
AATACAAATCAAATCACCACTTGAAATTTTTGTAGAAGAAGACAAAGTCATTTTACAAAAATATCAACCATACAATGCTT
GTCAAATAACAGGTGATGTTTCAGATCAAAATATTTCATTAGCAAATGGAAACATTACTGTTAGTATAGAAGGCGCAAAA
CATGTAATAAAAGAAATTGAGCAGTTTTTGAACAAGAGTAAGATTTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A366G1Y4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

56.383

98.947

0.558

Multiple sequence alignment