Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   V8V52_RS09260 Genome accession   NZ_CP150648
Coordinates   1772118..1772576 (-) Length   152 a.a.
NCBI ID   WP_002192638.1    Uniprot ID   R8I4H6
Organism   Bacillus mycoides strain 4BM1     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1767118..1777576
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V8V52_RS09235 (V8V52_09235) - 1767245..1768786 (-) 1542 WP_088034429.1 MDR family MFS transporter -
  V8V52_RS09240 (V8V52_09240) - 1769212..1769712 (+) 501 WP_002192634.1 hypothetical protein -
  V8V52_RS09245 (V8V52_09245) - 1769744..1769977 (-) 234 WP_002192635.1 SPP1 phage holin family protein -
  V8V52_RS09250 (V8V52_09250) - 1770142..1770783 (+) 642 WP_002192636.1 diguanylate cyclase -
  V8V52_RS09255 (V8V52_09255) - 1771425..1772087 (+) 663 WP_088034431.1 YkyA family protein -
  V8V52_RS09260 (V8V52_09260) kre 1772118..1772576 (-) 459 WP_002192638.1 YkyB family protein Regulator
  V8V52_RS09265 (V8V52_09265) - 1772718..1774292 (+) 1575 WP_088034433.1 Ppx/GppA family phosphatase -
  V8V52_RS09270 (V8V52_09270) - 1774401..1776509 (+) 2109 WP_002014829.1 polyphosphate kinase -
  V8V52_RS09275 (V8V52_09275) - 1776676..1776912 (-) 237 WP_002014830.1 hypothetical protein -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 17727.42 Da        Isoelectric Point: 10.6793

>NTDB_id=970925 V8V52_RS09260 WP_002192638.1 1772118..1772576(-) (kre) [Bacillus mycoides strain 4BM1]
MKPSQPQSPLHNQHSINRLAQSIFVVNRHAKAATNPKYLYWLKKTALERLITEKKAIKEGLHFSRNPRFSQQQSDVLIRL
GDYFFHIPPTKDDFRTLPHLGHLESSYRNPKTTLSLTIAKKTLQDYIGPEALKQEKKLSEAVPWYSRTYTKK

Nucleotide


Download         Length: 459 bp        

>NTDB_id=970925 V8V52_RS09260 WP_002192638.1 1772118..1772576(-) (kre) [Bacillus mycoides strain 4BM1]
ATGAAACCTTCACAACCACAATCTCCATTGCATAATCAACATTCTATTAATAGACTAGCTCAATCTATTTTCGTTGTGAA
TCGTCATGCTAAAGCTGCAACTAACCCTAAGTACTTATATTGGTTAAAAAAGACTGCTTTAGAACGCTTAATTACTGAAA
AAAAGGCTATCAAAGAAGGATTACATTTTTCTAGAAATCCACGTTTTAGTCAACAACAATCCGATGTTCTTATACGTTTA
GGTGATTATTTTTTCCATATCCCTCCTACGAAAGATGATTTTCGCACCCTACCGCATCTTGGTCACCTTGAATCCTCCTA
TCGAAATCCGAAAACAACCTTATCTTTAACAATAGCAAAAAAAACACTTCAAGATTATATTGGTCCTGAAGCATTAAAAC
AAGAAAAAAAATTAAGCGAAGCAGTTCCATGGTATAGCCGTACCTATACAAAAAAATAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(16-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB R8I4H6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

63.793

76.316

0.487

Multiple sequence alignment