Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   V8V52_RS08305 Genome accession   NZ_CP150648
Coordinates   1601396..1603135 (+) Length   579 a.a.
NCBI ID   WP_002088564.1    Uniprot ID   R8I3K9
Organism   Bacillus mycoides strain 4BM1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1596396..1608135
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V8V52_RS08285 (V8V52_08285) ispA 1596597..1597490 (+) 894 WP_088034301.1 (2E,6E)-farnesyl diphosphate synthase -
  V8V52_RS08290 (V8V52_08290) dxs 1597798..1599690 (+) 1893 WP_002143098.1 1-deoxy-D-xylulose-5-phosphate synthase -
  V8V52_RS08295 (V8V52_08295) - 1599694..1600533 (+) 840 WP_088034303.1 TlyA family RNA methyltransferase -
  V8V52_RS08300 (V8V52_08300) argR 1600676..1601125 (+) 450 WP_002015076.1 arginine repressor ArgR -
  V8V52_RS08305 (V8V52_08305) recN 1601396..1603135 (+) 1740 WP_002088564.1 DNA repair protein RecN Machinery gene
  V8V52_RS08310 (V8V52_08310) spoIVB 1603255..1604547 (+) 1293 WP_088034305.1 SpoIVB peptidase -
  V8V52_RS08315 (V8V52_08315) spo0A 1604834..1605628 (+) 795 WP_002015081.1 sporulation transcription factor Spo0A Regulator
  V8V52_RS08320 (V8V52_08320) - 1605925..1606488 (+) 564 WP_088034307.1 PRK06770 family protein -
  V8V52_RS08325 (V8V52_08325) - 1606729..1606875 (-) 147 WP_001247671.1 YycC family protein -
  V8V52_RS08330 (V8V52_08330) - 1606926..1607654 (+) 729 WP_088034309.1 glycerophosphodiester phosphodiesterase -
  V8V52_RS08335 (V8V52_08335) - 1607706..1607939 (-) 234 WP_001190193.1 DUF2627 domain-containing protein -

Sequence

Protein


Download         Length: 579 a.a.        Molecular weight: 65667.92 Da        Isoelectric Point: 5.1569

>NTDB_id=970922 V8V52_RS08305 WP_002088564.1 1601396..1603135(+) (recN) [Bacillus mycoides strain 4BM1]
MLSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRGSAEFVRYGTEKAEIEGLFYVEDDKHPCIAK
AEELDIEIEDGMIILKRDIAANGKSVCRVNGKLVTLSILKEIGKTLVDIHGQHETQDLMNEERHMFMLDHFDGNRIVKQL
GIYQNVYTDYEKLKKQLKSLSENEQQMAHRLDLIQFQHEEIRKADLKMDEEYELTEERLKISNFEKIYKALGDAYRSLSG
DGQGLDHVRNAMGQMESITHLDEAYQENHDSIANSYYLLEEVAYQLREKLDMMEYDPKRLDEIETRLNEIRMLKRKYGNT
VEEILAYADKIEQEIFTIENKDVHIETTRKQLTKLEGVIVKEATLLSTMRHELADHLTSAIHQELKELYMEKTKFEVRIM
KRVGNVEEPLVEGTPVKLTADGYDHVEFYISTNPGEPLKPLSKVASGGELSRIILALKSIFSKHQGVASVIFDEVDTGVS
GRVAQAIAEKIYRVSVNSQVLCITHLPQVASMADSHLFIRKQVANDRTITSVTVLSTDEKVTEIARMISGVEITDLTTEH
AKELLTQAHHFKQTAEAIQ

Nucleotide


Download         Length: 1740 bp        

>NTDB_id=970922 V8V52_RS08305 WP_002088564.1 1601396..1603135(+) (recN) [Bacillus mycoides strain 4BM1]
TTGTTATCGGAATTATCGATCAGAAACTTTGCTATTATTGAGGCATTAAATATTTCTTTTCAAAAAGGTTTAACCGTTTT
AAGTGGTGAAACAGGAGCTGGAAAATCCATTATTATTGATGCAATTAGTTTGCTTGTTGGTGGCCGTGGTTCAGCAGAAT
TTGTTCGATATGGAACAGAAAAGGCTGAGATAGAAGGCTTATTCTATGTAGAAGATGACAAACATCCATGTATCGCAAAG
GCAGAAGAGTTAGATATAGAAATAGAAGATGGCATGATTATTTTGAAGCGTGACATCGCTGCGAACGGAAAAAGTGTCTG
TCGTGTAAATGGGAAACTTGTTACACTCAGCATATTAAAAGAGATTGGAAAAACGCTAGTTGATATTCATGGACAGCATG
AAACACAAGATTTAATGAATGAAGAGCGTCATATGTTTATGCTTGATCATTTTGATGGAAATCGCATTGTTAAACAATTG
GGCATATATCAAAATGTATATACAGACTATGAGAAGTTAAAAAAACAGCTGAAATCTTTAAGTGAAAATGAACAACAAAT
GGCCCATCGTCTAGATTTAATTCAATTCCAACATGAAGAAATTCGTAAGGCGGATTTAAAAATGGATGAAGAATATGAAT
TGACTGAGGAACGATTAAAAATCTCCAATTTTGAAAAGATTTATAAAGCATTAGGAGATGCGTATCGTTCGTTAAGTGGA
GACGGACAGGGATTGGATCACGTAAGAAATGCAATGGGACAAATGGAGAGTATTACGCACTTAGATGAAGCGTATCAAGA
AAATCATGATTCTATTGCGAATAGTTATTACTTATTAGAAGAAGTTGCATACCAGCTTAGAGAAAAATTAGATATGATGG
AATATGATCCGAAACGTCTAGATGAAATTGAAACACGTTTGAATGAAATCCGTATGTTAAAGAGAAAGTATGGAAATACT
GTAGAAGAGATTTTAGCGTATGCTGATAAAATTGAACAAGAAATTTTTACGATTGAAAATAAAGACGTGCATATTGAAAC
GACGAGAAAGCAGTTAACGAAATTAGAAGGTGTTATTGTAAAAGAAGCAACGTTGTTAAGTACTATGCGTCATGAGCTTG
CAGATCATCTTACAAGCGCTATTCATCAAGAATTAAAAGAACTATATATGGAAAAAACGAAATTTGAAGTGAGAATTATG
AAGAGGGTAGGAAATGTAGAAGAACCTCTCGTGGAAGGAACACCGGTAAAACTTACGGCGGATGGCTACGATCATGTGGA
ATTTTATATTTCAACGAATCCGGGTGAACCGTTAAAGCCACTTTCAAAGGTCGCTTCTGGCGGAGAGTTATCTCGTATTA
TTTTAGCTTTAAAAAGCATTTTTTCTAAGCATCAAGGTGTTGCATCTGTTATTTTTGATGAAGTGGATACGGGTGTGAGT
GGTCGGGTTGCACAGGCTATTGCGGAAAAAATTTATCGTGTATCAGTAAACTCGCAAGTACTTTGTATTACGCACTTACC
TCAAGTAGCTTCAATGGCGGACTCTCATTTATTTATTAGAAAACAAGTGGCGAATGATCGTACGATTACATCGGTTACTG
TGTTAAGTACGGATGAAAAAGTAACAGAAATTGCTCGAATGATTTCTGGTGTTGAAATTACAGATTTAACGACAGAGCAT
GCGAAAGAGTTACTTACGCAAGCGCATCATTTCAAACAGACAGCAGAGGCTATCCAGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB R8I3K9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

59.931

100

0.599

Multiple sequence alignment