Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | V8V52_RS07950 | Genome accession | NZ_CP150648 |
| Coordinates | 1550845..1551888 (+) | Length | 347 a.a. |
| NCBI ID | WP_088034273.1 | Uniprot ID | A0A243A3M9 |
| Organism | Bacillus mycoides strain 4BM1 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1545845..1556888
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| V8V52_RS07915 (V8V52_07915) | - | 1546056..1546544 (+) | 489 | WP_002015119.1 | hypothetical protein | - |
| V8V52_RS07920 (V8V52_07920) | - | 1546580..1546891 (-) | 312 | WP_002165070.1 | hypothetical protein | - |
| V8V52_RS07925 (V8V52_07925) | - | 1547144..1547359 (+) | 216 | WP_002034026.1 | DUF3912 family protein | - |
| V8V52_RS07930 (V8V52_07930) | - | 1547429..1547839 (+) | 411 | WP_165689457.1 | hypothetical protein | - |
| V8V52_RS07935 (V8V52_07935) | - | 1547920..1549314 (-) | 1395 | WP_002138338.1 | L-cystine transporter | - |
| V8V52_RS07940 (V8V52_07940) | - | 1549421..1549663 (-) | 243 | WP_002015110.1 | DUF2626 domain-containing protein | - |
| V8V52_RS07945 (V8V52_07945) | - | 1549944..1550639 (-) | 696 | WP_002014995.1 | helix-turn-helix domain-containing protein | - |
| V8V52_RS07950 (V8V52_07950) | comGA | 1550845..1551888 (+) | 1044 | WP_088034273.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| V8V52_RS07955 (V8V52_07955) | comGB | 1551875..1552912 (+) | 1038 | WP_088034275.1 | competence type IV pilus assembly protein ComGB | - |
| V8V52_RS07960 (V8V52_07960) | comGC | 1552924..1553223 (+) | 300 | WP_002088623.1 | competence type IV pilus major pilin ComGC | - |
| V8V52_RS07965 (V8V52_07965) | comGD | 1553220..1553675 (+) | 456 | WP_002165074.1 | competence type IV pilus minor pilin ComGD | - |
| V8V52_RS07970 (V8V52_07970) | - | 1553668..1553964 (+) | 297 | WP_002088621.1 | hypothetical protein | - |
| V8V52_RS07975 (V8V52_07975) | comGF | 1553948..1554409 (+) | 462 | WP_002165076.1 | competence type IV pilus minor pilin ComGF | - |
| V8V52_RS07980 (V8V52_07980) | comGG | 1554406..1554777 (+) | 372 | WP_088034277.1 | competence type IV pilus minor pilin ComGG | - |
| V8V52_RS07985 (V8V52_07985) | - | 1554951..1555601 (+) | 651 | WP_002138329.1 | 2OG-Fe(II) oxygenase | - |
| V8V52_RS07990 (V8V52_07990) | - | 1555753..1556250 (+) | 498 | WP_002129082.1 | shikimate kinase | - |
| V8V52_RS07995 (V8V52_07995) | - | 1556289..1556489 (+) | 201 | WP_002015009.1 | YqzE family protein | - |
Sequence
Protein
Download Length: 347 a.a. Molecular weight: 39279.73 Da Isoelectric Point: 9.4643
>NTDB_id=970921 V8V52_RS07950 WP_088034273.1 1550845..1551888(+) (comGA) [Bacillus mycoides strain 4BM1]
MNSVELFANMIIKEACRVQASDLHIVPRQKDVAIQLRIGKDLITKRCIEKEFGEKLVSHFKFLASMDIGERRKPQNGSLY
LQIDGQEVYLRFSTLPTVYQESLVIRLHLQASVQPLSHLSLFPSSAEKLLSFLKHSHGLLVFTGPTGSGKTTTMYALLEV
ARKWQTRRIITLEDPVEQRKDGLLQIQINEKAGITYKTGLKAILRHDPDIILVGEIRDEETAKVAVRASLTGHLVMTTLH
TNNAKGAILRFMDYGITRQEIEQSLLAVAAQRLVELKCPFCRGKCATLCKSMRKVRQASIYELLYGYELKQAIKEASGEH
VTYHYKTLESSVRKGYALGFLEEDVYV
MNSVELFANMIIKEACRVQASDLHIVPRQKDVAIQLRIGKDLITKRCIEKEFGEKLVSHFKFLASMDIGERRKPQNGSLY
LQIDGQEVYLRFSTLPTVYQESLVIRLHLQASVQPLSHLSLFPSSAEKLLSFLKHSHGLLVFTGPTGSGKTTTMYALLEV
ARKWQTRRIITLEDPVEQRKDGLLQIQINEKAGITYKTGLKAILRHDPDIILVGEIRDEETAKVAVRASLTGHLVMTTLH
TNNAKGAILRFMDYGITRQEIEQSLLAVAAQRLVELKCPFCRGKCATLCKSMRKVRQASIYELLYGYELKQAIKEASGEH
VTYHYKTLESSVRKGYALGFLEEDVYV
Nucleotide
Download Length: 1044 bp
>NTDB_id=970921 V8V52_RS07950 WP_088034273.1 1550845..1551888(+) (comGA) [Bacillus mycoides strain 4BM1]
ATGAATAGTGTCGAGCTTTTTGCAAATATGATTATAAAAGAAGCTTGTAGGGTGCAAGCATCGGACTTACATATTGTGCC
CAGGCAGAAGGATGTGGCGATTCAATTACGTATTGGAAAAGATTTAATTACGAAACGGTGTATTGAGAAAGAATTTGGAG
AAAAGCTTGTTTCACACTTTAAATTTTTAGCATCAATGGATATAGGAGAGAGGAGAAAACCTCAAAATGGTTCGTTGTAC
TTACAAATTGATGGACAAGAAGTGTATTTACGCTTTTCAACACTTCCAACAGTATATCAAGAAAGTCTCGTTATTCGCCT
CCATTTACAAGCATCTGTACAGCCACTGTCTCATCTTTCGTTATTTCCAAGTTCAGCGGAAAAATTACTCTCTTTTTTAA
AGCATTCTCATGGGTTACTCGTATTTACTGGGCCAACTGGTTCTGGAAAAACAACAACAATGTATGCGTTATTAGAAGTA
GCTAGAAAATGGCAAACACGTCGCATCATTACACTGGAAGATCCAGTTGAGCAAAGAAAAGACGGTTTATTACAAATTCA
AATAAATGAAAAAGCTGGTATCACATATAAAACGGGATTAAAGGCTATTTTACGTCATGATCCAGATATTATTTTAGTTG
GCGAAATTCGTGATGAAGAAACAGCAAAAGTAGCTGTAAGGGCCAGTTTGACGGGACATTTAGTAATGACAACCTTGCAT
ACAAATAATGCGAAAGGAGCGATACTACGATTTATGGATTATGGTATTACAAGGCAAGAAATTGAACAATCATTATTAGC
AGTAGCTGCTCAGCGGCTCGTCGAATTAAAATGTCCATTTTGCAGAGGGAAGTGTGCAACTTTATGTAAATCAATGAGGA
AAGTGAGACAGGCAAGCATTTATGAACTGTTATATGGATATGAATTAAAACAAGCGATTAAAGAAGCAAGTGGAGAACAT
GTTACGTATCACTATAAAACGTTGGAATCGTCGGTTCGAAAAGGGTATGCTTTAGGCTTTTTAGAAGAAGATGTATATGT
TTAA
ATGAATAGTGTCGAGCTTTTTGCAAATATGATTATAAAAGAAGCTTGTAGGGTGCAAGCATCGGACTTACATATTGTGCC
CAGGCAGAAGGATGTGGCGATTCAATTACGTATTGGAAAAGATTTAATTACGAAACGGTGTATTGAGAAAGAATTTGGAG
AAAAGCTTGTTTCACACTTTAAATTTTTAGCATCAATGGATATAGGAGAGAGGAGAAAACCTCAAAATGGTTCGTTGTAC
TTACAAATTGATGGACAAGAAGTGTATTTACGCTTTTCAACACTTCCAACAGTATATCAAGAAAGTCTCGTTATTCGCCT
CCATTTACAAGCATCTGTACAGCCACTGTCTCATCTTTCGTTATTTCCAAGTTCAGCGGAAAAATTACTCTCTTTTTTAA
AGCATTCTCATGGGTTACTCGTATTTACTGGGCCAACTGGTTCTGGAAAAACAACAACAATGTATGCGTTATTAGAAGTA
GCTAGAAAATGGCAAACACGTCGCATCATTACACTGGAAGATCCAGTTGAGCAAAGAAAAGACGGTTTATTACAAATTCA
AATAAATGAAAAAGCTGGTATCACATATAAAACGGGATTAAAGGCTATTTTACGTCATGATCCAGATATTATTTTAGTTG
GCGAAATTCGTGATGAAGAAACAGCAAAAGTAGCTGTAAGGGCCAGTTTGACGGGACATTTAGTAATGACAACCTTGCAT
ACAAATAATGCGAAAGGAGCGATACTACGATTTATGGATTATGGTATTACAAGGCAAGAAATTGAACAATCATTATTAGC
AGTAGCTGCTCAGCGGCTCGTCGAATTAAAATGTCCATTTTGCAGAGGGAAGTGTGCAACTTTATGTAAATCAATGAGGA
AAGTGAGACAGGCAAGCATTTATGAACTGTTATATGGATATGAATTAAAACAAGCGATTAAAGAAGCAAGTGGAGAACAT
GTTACGTATCACTATAAAACGTTGGAATCGTCGGTTCGAAAAGGGTATGCTTTAGGCTTTTTAGAAGAAGATGTATATGT
TTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Bacillus subtilis subsp. subtilis str. 168 |
57.349 |
100 |
0.573 |
| pilB | Glaesserella parasuis strain SC1401 |
42.808 |
84.15 |
0.36 |