Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   V8V52_RS07685 Genome accession   NZ_CP150648
Coordinates   1498445..1499191 (+) Length   248 a.a.
NCBI ID   WP_002088669.1    Uniprot ID   R8MN78
Organism   Bacillus mycoides strain 4BM1     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 1493445..1504191
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V8V52_RS07655 (V8V52_07655) - 1493734..1495878 (+) 2145 WP_016120818.1 HD family phosphohydrolase -
  V8V52_RS07660 (V8V52_07660) ybeY 1495875..1496345 (+) 471 WP_002165062.1 rRNA maturation RNase YbeY -
  V8V52_RS07665 (V8V52_07665) - 1496342..1496695 (+) 354 WP_088034237.1 diacylglycerol kinase family protein -
  V8V52_RS07670 (V8V52_07670) - 1496795..1497193 (+) 399 WP_002015184.1 cytidine deaminase -
  V8V52_RS07675 (V8V52_07675) era 1497186..1498091 (+) 906 WP_002088672.1 GTPase Era -
  V8V52_RS07680 (V8V52_07680) - 1498268..1498411 (+) 144 WP_000883924.1 YqzL family protein -
  V8V52_RS07685 (V8V52_07685) recO 1498445..1499191 (+) 747 WP_002088669.1 DNA repair protein RecO Machinery gene
  V8V52_RS07690 (V8V52_07690) - 1499298..1499930 (+) 633 WP_088034669.1 helix-turn-helix transcriptional regulator -
  V8V52_RS07695 (V8V52_07695) - 1499960..1500772 (+) 813 WP_088034239.1 pyruvate, water dikinase regulatory protein -
  V8V52_RS07700 (V8V52_07700) - 1501437..1501580 (+) 144 WP_162836445.1 hypothetical protein -
  V8V52_RS07705 (V8V52_07705) dnaG 1501662..1503464 (+) 1803 WP_002067179.1 DNA primase -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 28649.18 Da        Isoelectric Point: 7.7708

>NTDB_id=970920 V8V52_RS07685 WP_002088669.1 1498445..1499191(+) (recO) [Bacillus mycoides strain 4BM1]
MFQKVEGIVIRTTDYGETNKIVTIYSREFGKVSAMARGAKKPKSRLAAISQLMTHGHFLIQMGSGLGTLQQGEIISSMKE
IREDIFLTAYASFIIELTDKATEDKKHNPYLFEMLYQTLHYMCEGVDPEVLSLIYQTKMLPVLGMHPYFDTCAICHQETD
FVAFSVREGGFLCSRHAEQDPYRIPVGEAVHKLLRLFFHFDLHRLGNVSVKDSTKKQMRTVLNTYYDEYCGIYLKTRRFL
EQLDKFQI

Nucleotide


Download         Length: 747 bp        

>NTDB_id=970920 V8V52_RS07685 WP_002088669.1 1498445..1499191(+) (recO) [Bacillus mycoides strain 4BM1]
ATGTTTCAAAAAGTTGAGGGCATTGTTATCCGTACGACAGATTACGGAGAAACAAATAAGATTGTTACAATATACTCACG
GGAATTTGGTAAGGTAAGTGCAATGGCAAGAGGGGCGAAAAAGCCGAAGAGTCGGTTAGCAGCTATTTCGCAACTTATGA
CACATGGTCATTTTCTTATTCAAATGGGATCTGGACTTGGAACTTTGCAACAAGGCGAGATTATTTCATCTATGAAAGAA
ATTCGCGAGGATATATTTTTAACTGCTTATGCATCATTTATTATCGAATTAACTGATAAAGCAACAGAAGATAAGAAGCA
TAATCCGTATTTATTTGAAATGTTATATCAAACGTTGCATTATATGTGTGAGGGTGTTGACCCAGAAGTATTATCATTAA
TTTATCAAACGAAAATGCTTCCGGTATTAGGGATGCACCCGTACTTTGATACATGTGCTATTTGTCATCAAGAAACAGAT
TTTGTCGCCTTCTCTGTCAGGGAAGGCGGTTTTCTGTGCTCGCGTCATGCGGAACAAGATCCGTATCGTATTCCGGTGGG
AGAGGCTGTTCATAAATTATTACGTCTCTTTTTTCATTTTGATTTACACCGACTCGGTAATGTATCGGTGAAGGATAGTA
CAAAAAAACAAATGCGCACAGTATTGAATACATATTATGATGAATATTGTGGGATTTATTTGAAAACAAGGCGTTTCTTG
GAACAACTTGATAAGTTTCAAATATAA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB R8MN78

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

55.466

99.597

0.552

Multiple sequence alignment