Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   V8V52_RS01745 Genome accession   NZ_CP150648
Coordinates   319928..321055 (-) Length   375 a.a.
NCBI ID   WP_002034987.1    Uniprot ID   -
Organism   Bacillus mycoides strain 4BM1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 314928..326055
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V8V52_RS01735 (V8V52_01735) gyrA 315407..317878 (-) 2472 WP_002034984.1 DNA gyrase subunit A -
  V8V52_RS01740 (V8V52_01740) gyrB 317967..319889 (-) 1923 WP_033708486.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  V8V52_RS01745 (V8V52_01745) recF 319928..321055 (-) 1128 WP_002034987.1 DNA replication/repair protein RecF Machinery gene
  V8V52_RS01750 (V8V52_01750) yaaA 321068..321280 (-) 213 WP_002016484.1 S4 domain-containing protein YaaA -
  V8V52_RS01755 (V8V52_01755) dnaN 321409..322554 (-) 1146 WP_088033930.1 DNA polymerase III subunit beta -
  V8V52_RS01760 (V8V52_01760) dnaA 322737..324077 (-) 1341 WP_002016481.1 chromosomal replication initiator protein DnaA -
  V8V52_RS01765 (V8V52_01765) rpmH 324641..324775 (+) 135 WP_000831901.1 50S ribosomal protein L34 -
  V8V52_RS01770 (V8V52_01770) rnpA 324852..325199 (+) 348 WP_002089963.1 ribonuclease P protein component -
  V8V52_RS01775 (V8V52_01775) spoIIIJ 325252..326019 (+) 768 WP_002130197.1 YidC family membrane integrase SpoIIIJ -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 43514.79 Da        Isoelectric Point: 6.8418

>NTDB_id=970903 V8V52_RS01745 WP_002034987.1 319928..321055(-) (recF) [Bacillus mycoides strain 4BM1]
MFITEIQLKNYRNYEHLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDRELIRWDEDYGNIKGRLQRRNSS
ISLELNISKKGKKAKLNQLEQQKLSQYIGEMNVVMFAPEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQR
NHLLKKMQGNSKNEETMLDVFTLQLIEHGAKILRKRFEFLHLLQEWAAPIHRGISRGLEELEIVYKPSVDVSESMDLSKI
KEVYYESFQSVKQREIFRGTTLLGPHRDDLQFFVNSKNVQVFGSQGQQRTTALSLKLAEIELIYSEVKEYPILLLDDVLS
ELDDYRQSHLLNTIQGKVQTFVTTTSVEGIEHETLKEAKTIHVTNGTVDCEIDRK

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=970903 V8V52_RS01745 WP_002034987.1 319928..321055(-) (recF) [Bacillus mycoides strain 4BM1]
TTGTTTATTACAGAAATACAATTAAAAAACTATCGCAATTATGAGCATTTAGAGCTTTCCTTTGAGGATAAAGTCAATGT
AATTATTGGTGAAAATGCGCAAGGGAAAACGAATCTGATGGAAGCTATTTATGTATTGGCGATGGCGAAATCTCATAGAA
CTTCGAACGATCGTGAACTCATTCGTTGGGATGAGGATTATGGTAATATAAAAGGTAGATTACAAAGGCGAAATAGTTCA
ATATCCTTAGAATTAAATATTTCAAAAAAAGGTAAAAAGGCAAAGTTAAATCAGTTAGAACAACAAAAATTGAGCCAGTA
TATTGGTGAAATGAATGTTGTTATGTTTGCCCCAGAAGATTTAAATCTTGTAAAAGGAAGCCCTCAAGTACGAAGACGCT
TTTTGGATATGGAACTTGGACAAATAGCTCCGGTCTATTTGTATGAATTAAGTCAATATCAAAAGGTACTCACGCAACGA
AATCATTTACTTAAGAAGATGCAAGGGAATAGTAAAAATGAAGAAACGATGTTGGATGTATTTACACTTCAACTTATTGA
GCATGGTGCAAAAATTTTGCGAAAACGTTTTGAGTTTTTGCATTTACTACAAGAATGGGCTGCTCCAATTCATCGCGGAA
TTAGCAGGGGATTAGAGGAGTTAGAAATCGTTTATAAACCAAGTGTAGATGTATCAGAATCAATGGATTTGTCGAAAATA
AAAGAAGTATACTATGAAAGTTTTCAATCTGTGAAACAACGTGAAATTTTTCGGGGTACAACTTTACTTGGTCCTCATCG
TGATGATTTACAATTCTTCGTTAATAGTAAAAATGTTCAAGTCTTTGGTTCACAAGGACAACAACGAACAACCGCACTAT
CCCTAAAATTGGCTGAAATTGAATTGATATACTCAGAGGTTAAGGAATATCCAATTCTTTTACTAGATGATGTGTTATCA
GAATTAGATGATTATCGTCAATCGCATCTGCTAAATACAATTCAAGGAAAAGTACAAACCTTTGTGACAACGACGAGTGT
CGAGGGAATTGAACATGAAACATTGAAAGAAGCGAAAACAATTCATGTAACGAACGGCACGGTAGATTGTGAAATAGACA
GAAAATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

67.12

98.133

0.659

Multiple sequence alignment