Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   ACLII2_RS21855 Genome accession   NZ_CP178213
Coordinates   4157074..4157304 (-) Length   76 a.a.
NCBI ID   WP_003243417.1    Uniprot ID   A0ABU0VCT2
Organism   Bacillus subtilis subsp. subtilis strain BM107     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4152074..4162304
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLII2_RS21845 spoVT 4152799..4153335 (-) 537 WP_003218365.1 stage V sporulation protein T -
  ACLII2_RS21850 mfd 4153471..4157004 (-) 3534 WP_003243453.1 transcription-repair coupling factor -
  ACLII2_RS21855 subA/fin 4157074..4157304 (-) 231 WP_003243417.1 anti-sigma-F factor Fin Machinery gene
  ACLII2_RS21860 pth 4157364..4157930 (-) 567 WP_003226727.1 aminoacyl-tRNA hydrolase -
  ACLII2_RS21865 rplYB 4158037..4158651 (-) 615 WP_003243443.1 50S ribosomal protein L25/general stress protein Ctc -
  ACLII2_RS21870 prsS 4158736..4159689 (-) 954 WP_003218353.1 ribose-phosphate diphosphokinase -
  ACLII2_RS21875 glmU 4159712..4161082 (-) 1371 WP_003226732.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  ACLII2_RS21880 spoVG 4161275..4161568 (-) 294 WP_003218346.1 septation regulator SpoVG -
  ACLII2_RS21885 ridA 4161762..4162139 (-) 378 WP_003226738.1 2-iminobutanoate/2-iminopropanoate deaminase -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8847.81 Da        Isoelectric Point: 5.3895

>NTDB_id=970868 ACLII2_RS21855 WP_003243417.1 4157074..4157304(-) (subA/fin) [Bacillus subtilis subsp. subtilis strain BM107]
MALHYYCRHCGVKVGSLESSMVSTDSLGFQHLTNEERNDMISYKENGDVHVLTICEDCQEALDRNPHYHEYHTFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=970868 ACLII2_RS21855 WP_003243417.1 4157074..4157304(-) (subA/fin) [Bacillus subtilis subsp. subtilis strain BM107]
ATGGCTTTGCATTATTATTGTCGTCATTGCGGAGTGAAAGTAGGCAGTCTCGAATCTTCAATGGTATCGACAGACTCACT
TGGATTTCAGCACTTAACAAATGAGGAAAGAAACGATATGATTTCTTATAAAGAAAATGGAGATGTCCATGTTTTGACGA
TATGTGAAGACTGCCAAGAGGCGCTTGACCGAAATCCGCATTACCACGAATATCACACATTTATTCAATAA

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

100

100

1