Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   WMO13_RS05835 Genome accession   NZ_CP150637
Coordinates   1417475..1418425 (-) Length   316 a.a.
NCBI ID   WP_026878624.1    Uniprot ID   -
Organism   Ignatzschineria larvae DSM 13226     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1412475..1423425
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WMO13_RS05810 (WMO13_05810) - 1413021..1413464 (-) 444 WP_084331448.1 DUF4377 domain-containing protein -
  WMO13_RS05815 (WMO13_05815) - 1413761..1414072 (+) 312 WP_026878620.1 YqfO family protein -
  WMO13_RS05820 (WMO13_05820) - 1414557..1415537 (-) 981 WP_026878621.1 siderophore ABC transporter substrate-binding protein -
  WMO13_RS05825 (WMO13_05825) - 1415742..1416500 (-) 759 WP_026878622.1 ATP-binding cassette domain-containing protein -
  WMO13_RS05830 (WMO13_05830) - 1416501..1417478 (-) 978 WP_034855473.1 iron chelate uptake ABC transporter family permease subunit -
  WMO13_RS05835 (WMO13_05835) ceuB 1417475..1418425 (-) 951 WP_026878624.1 ABC transporter permease Machinery gene
  WMO13_RS05840 (WMO13_05840) nhaC 1419322..1420779 (-) 1458 WP_051396152.1 Na+/H+ antiporter NhaC -
  WMO13_RS05845 (WMO13_05845) - 1421321..1421509 (-) 189 WP_156923255.1 hypothetical protein -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34356.66 Da        Isoelectric Point: 9.9415

>NTDB_id=970842 WMO13_RS05835 WP_026878624.1 1417475..1418425(-) (ceuB) [Ignatzschineria larvae DSM 13226]
MRIHFWVLILIVLSVISLFVGVINISVNDLFHLTDAQKQTILISRLPRLIAILIAGASLSISGLIMQKLSQNPFVSPTTA
GTMESARLGILVAILFVPGASPLLKMALAFIFALGGTYIFVQILNRIRYKDAIFIPLIGLMFGGIIGSISTFIAYKYDLI
QNLASWLIGDFSMVMAGRYELIYIAVPLMVIAYLYAHQFSIAGMGQDFAKNLGLKYQQVVNIGLAIVAMVSASVILTVGM
IPFLGLIVPNIVSLYRGDNIRATLPFTAILGAIIVLICDIAGRLIIYPYEIPISVMIGIVGSIAFIWLLFKKVGSA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=970842 WMO13_RS05835 WP_026878624.1 1417475..1418425(-) (ceuB) [Ignatzschineria larvae DSM 13226]
ATGAGAATACATTTTTGGGTTCTCATTCTCATTGTATTATCTGTGATCTCTCTCTTTGTAGGAGTCATCAATATTTCTGT
GAATGACCTCTTTCATCTGACAGATGCGCAAAAACAGACGATCTTAATTAGTCGCTTGCCGAGATTGATTGCGATTCTGA
TTGCCGGCGCTAGCCTCTCGATTAGTGGCCTCATTATGCAAAAGTTGAGTCAAAATCCTTTTGTCTCGCCGACAACGGCA
GGAACAATGGAATCTGCACGATTGGGGATTTTAGTAGCTATCCTTTTTGTCCCTGGCGCTTCGCCACTTTTGAAAATGGC
TCTGGCTTTTATCTTTGCATTGGGTGGAACCTATATATTTGTTCAAATTCTCAATCGTATTCGCTATAAAGATGCGATAT
TTATTCCGCTGATTGGCCTGATGTTTGGCGGTATTATCGGTTCTATTTCCACCTTTATTGCTTATAAATATGATCTCATT
CAAAATCTAGCTTCTTGGCTCATCGGCGATTTTTCTATGGTAATGGCAGGGCGCTATGAGTTGATCTATATTGCCGTTCC
CTTGATGGTGATTGCTTATCTCTACGCACATCAATTCTCTATTGCCGGTATGGGACAAGATTTTGCTAAAAACTTAGGGC
TTAAATATCAACAAGTGGTCAATATCGGTCTTGCTATTGTGGCAATGGTGAGTGCTTCGGTGATTTTAACGGTTGGTATG
ATTCCATTTTTAGGGCTAATTGTGCCGAATATTGTGTCACTCTATCGGGGCGATAATATTCGGGCTACCTTGCCATTTAC
CGCTATTTTAGGCGCAATTATCGTTTTAATATGTGACATTGCTGGACGCTTAATTATCTATCCTTATGAAATTCCTATTA
GTGTTATGATTGGTATTGTCGGGAGTATTGCTTTTATCTGGCTTCTCTTTAAGAAGGTAGGTTCGGCATGA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

52.597

97.468

0.513

Multiple sequence alignment