Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   ACLII2_RS15325 Genome accession   NZ_CP178213
Coordinates   2900420..2901556 (-) Length   378 a.a.
NCBI ID   WP_010886491.1    Uniprot ID   Q00828
Organism   Bacillus subtilis subsp. subtilis strain BM107     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 2895420..2906556
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLII2_RS15285 xre 2895752..2896093 (+) 342 WP_003232719.1 HTH-type transcriptional regulator Xre -
  ACLII2_RS15290 xkdA 2896256..2896852 (+) 597 WP_003232721.1 ImmA/IrrE family metallo-endopeptidase -
  ACLII2_RS15295 xpdC 2896896..2897732 (-) 837 WP_003245071.1 manganese catalase family protein -
  ACLII2_RS15300 pghB 2897809..2898411 (-) 603 WP_003244789.1 poly-gamma-glutamate hydrolase family protein -
  ACLII2_RS15305 yjqA 2898517..2898894 (+) 378 WP_003245254.1 PH domain-containing protein -
  ACLII2_RS15310 xlyB 2898934..2899887 (-) 954 WP_003244876.1 N-acetylmuramoyl-L-alanine amidase -
  ACLII2_RS15315 yjpA 2900008..2900265 (+) 258 WP_003232731.1 YciI family protein -
  ACLII2_RS15320 phrA 2900296..2900430 (-) 135 WP_003245487.1 phosphatase RapA inhibitor PhrA -
  ACLII2_RS15325 rapC 2900420..2901556 (-) 1137 WP_010886491.1 response regulator aspartate phosphatase RapA Regulator
  ACLII2_RS15330 yjoB 2901701..2902972 (-) 1272 WP_003245490.1 ATPase YjoB -
  ACLII2_RS15335 bstD 2903121..2903585 (+) 465 WP_003245144.1 DinB family protein -
  ACLII2_RS15340 yjnA 2903810..2904574 (+) 765 WP_003245643.1 sulfite exporter TauE/SafE family protein -
  ACLII2_RS15345 uxaA 2904613..2906106 (-) 1494 WP_003245409.1 UxaA family hydrolase -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 44974.16 Da        Isoelectric Point: 4.7611

>NTDB_id=970816 ACLII2_RS15325 WP_010886491.1 2900420..2901556(-) (rapC) [Bacillus subtilis subsp. subtilis strain BM107]
MRMKQTIPSSYVGLKINEWYTHIRQFHVAEAERVKLEVEREIEDMEEDQDLLLYYSLMEFRHRVMLDYIKPFGEDTSQLE
FSELLEDIEGNQYKLTGLLEYYFNFFRGMYEFKQKMFVSAMMYYKRAEKNLALVSDDIEKAEFAFKMAEIFYNLKQTYVS
MSYAVQALETYQMYETYTVRRIQCEFVIAGNYDDMQYPERALPHLELALDLAKKEGNPRLISSALYNLGNCYEKMGELQK
AAEYFGKSVSICKSEKFDNLPHSIYSLTQVLYKQKNDAEAQKKYREGLEIARQYSDELFVELFQFLHALYGKNIDTESVS
HTFQFLEEHMLYPYIEELAHDAAQFYIENGQPEKALSFYEKMVHAQKQIQRGDCLYEI

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=970816 ACLII2_RS15325 WP_010886491.1 2900420..2901556(-) (rapC) [Bacillus subtilis subsp. subtilis strain BM107]
TTGAGGATGAAGCAGACGATTCCGTCCTCTTATGTCGGGCTTAAAATTAATGAATGGTATACTCATATCCGGCAGTTCCA
CGTCGCTGAAGCCGAACGGGTCAAGCTCGAAGTAGAAAGAGAAATTGAGGATATGGAAGAAGACCAAGATTTGCTGCTGT
ATTATTCTTTAATGGAGTTCAGGCACCGTGTCATGCTGGATTACATTAAGCCTTTTGGAGAGGACACGTCGCAGCTAGAG
TTTTCAGAATTGTTAGAAGACATCGAAGGGAATCAGTACAAGCTGACAGGGCTTCTCGAATATTACTTTAATTTTTTTCG
AGGAATGTATGAATTTAAGCAGAAGATGTTTGTCAGTGCCATGATGTATTATAAACGGGCAGAAAAGAATCTTGCCCTCG
TCTCGGATGATATTGAGAAAGCAGAGTTTGCTTTTAAAATGGCTGAGATTTTTTACAATTTAAAACAAACCTATGTTTCG
ATGAGCTACGCCGTTCAGGCATTAGAAACATACCAAATGTATGAAACGTACACCGTCCGCAGAATCCAATGTGAATTCGT
TATTGCAGGTAATTATGATGATATGCAGTATCCAGAAAGAGCATTGCCCCACTTAGAACTGGCTTTAGATCTTGCAAAGA
AAGAAGGCAATCCCCGCCTGATCAGTTCTGCCCTATATAATCTCGGAAACTGCTATGAGAAAATGGGTGAACTGCAAAAG
GCAGCCGAATACTTTGGGAAATCTGTTTCTATTTGCAAGTCGGAAAAGTTCGATAATCTTCCGCATTCTATCTACTCTTT
AACACAAGTTCTGTATAAACAAAAAAATGACGCCGAAGCGCAAAAAAAGTATCGTGAAGGATTGGAAATCGCCCGTCAAT
ACAGTGATGAATTATTTGTGGAGCTTTTTCAATTTTTACATGCGTTATACGGAAAAAACATTGACACAGAATCAGTCTCA
CACACCTTTCAATTTCTTGAAGAACATATGCTGTATCCTTATATTGAAGAGCTGGCGCATGATGCTGCCCAATTCTATAT
AGAAAACGGACAGCCCGAAAAAGCACTTTCATTTTATGAGAAAATGGTGCACGCACAAAAACAAATCCAGAGAGGAGATT
GTTTATATGAAATCTAA

Domains

Predicted by InterProScan.

Tetratricopeptide repeat (TPR_12)

(221-293)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q00828

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

44.681

99.471

0.444
  rapF Bacillus subtilis subsp. subtilis str. 168

41.689

100

0.418