Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   ACLII2_RS13940 Genome accession   NZ_CP178213
Coordinates   2648553..2649002 (-) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis subsp. subtilis strain BM107     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 2643553..2654002
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLII2_RS13910 sepM 2643632..2644657 (-) 1026 WP_003245451.1 protease DdcP Regulator
  ACLII2_RS13915 ylbK 2644659..2645441 (-) 783 WP_003232221.1 patatin family protein -
  ACLII2_RS13920 spoVV 2645622..2646848 (+) 1227 WP_003245492.1 dipicolinic acid transporter SpoVV -
  ACLII2_RS13925 coaD 2646859..2647344 (-) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  ACLII2_RS13930 rsmD 2647349..2647903 (-) 555 WP_003232227.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  ACLII2_RS13935 ylbG 2648226..2648498 (-) 273 WP_009967171.1 YlbG family protein -
  ACLII2_RS13940 ylbF 2648553..2649002 (-) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  ACLII2_RS13945 ylbE 2649118..2649357 (-) 240 WP_003232231.1 YlbE-like family protein -
  ACLII2_RS13950 ylbD 2649373..2649771 (-) 399 WP_003232233.1 YlbD family protein -
  ACLII2_RS13955 ylbC 2650003..2651043 (-) 1041 WP_003245434.1 CAP domain-containing protein -
  ACLII2_RS13960 ylbB 2651127..2651573 (-) 447 WP_003221362.1 CBS domain-containing protein -
  ACLII2_RS13965 ylbA 2651713..2652075 (+) 363 WP_003232238.1 YugN family protein -
  ACLII2_RS13970 ctaG 2652107..2653000 (-) 894 WP_003244967.1 cytochrome c oxidase assembly factor CtaG -
  ACLII2_RS13975 ctaF 2653027..2653359 (-) 333 WP_003232242.1 cytochrome c oxidase subunit IVB -
  ACLII2_RS13980 ctaE 2653362..2653985 (-) 624 WP_003232244.1 cytochrome c oxidase subunit III -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=970806 ACLII2_RS13940 WP_003221370.1 2648553..2649002(-) (ylbF) [Bacillus subtilis subsp. subtilis strain BM107]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=970806 ACLII2_RS13940 WP_003221370.1 2648553..2649002(-) (ylbF) [Bacillus subtilis subsp. subtilis strain BM107]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGATAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTTGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGCTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment