Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   ACLII2_RS12925 Genome accession   NZ_CP178213
Coordinates   2442615..2443046 (-) Length   143 a.a.
NCBI ID   WP_003231834.1    Uniprot ID   G4NVD0
Organism   Bacillus subtilis subsp. subtilis strain BM107     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 2437615..2448046
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLII2_RS12915 hexA 2439099..2441675 (-) 2577 WP_003244841.1 DNA mismatch repair protein MutS Machinery gene
  ACLII2_RS12920 cotE 2441808..2442353 (-) 546 WP_003231833.1 outer spore coat protein CotE -
  ACLII2_RS12925 ymcA 2442615..2443046 (-) 432 WP_003231834.1 regulatory iron-sulfur-containing complex subunit RicA Regulator
  ACLII2_RS12930 miaB 2443048..2444577 (-) 1530 WP_003244831.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  ACLII2_RS12935 kbl 2444725..2445903 (-) 1179 WP_003231837.1 glycine C-acetyltransferase -
  ACLII2_RS12940 tdh 2445916..2446959 (-) 1044 WP_003244880.1 L-threonine 3-dehydrogenase -
  ACLII2_RS12945 spoVS 2447225..2447485 (-) 261 WP_003154135.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16166.27 Da        Isoelectric Point: 5.0437

>NTDB_id=970794 ACLII2_RS12925 WP_003231834.1 2442615..2443046(-) (ymcA) [Bacillus subtilis subsp. subtilis strain BM107]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQE
ELEEIPVIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGDLLKGETGSKVKHSNNSCSL

Nucleotide


Download         Length: 432 bp        

>NTDB_id=970794 ACLII2_RS12925 WP_003231834.1 2442615..2443046(-) (ymcA) [Bacillus subtilis subsp. subtilis strain BM107]
ATGACGCTCTACTCAAAAAAAGACATTGTGCAGCAGGCTCGAAACCTTGCAAAAATGATTTCTGAAACAGAAGAGGTTGA
TTTTTTCAAACGGGCTGAAGCGCAAATCAATGAGAATGACAAAGTGTCCACAATCGTTAATCAGATTAAAGCCCTGCAAA
AGCAGGCTGTCAATCTGAAGCATTATGAAAAGCATGAAGCGCTCAAACAAGTAGAAGCAAAAATTGACGCGCTGCAAGAA
GAGCTTGAAGAGATTCCTGTTATCCAGGAATTCAGAGACTCGCAAATGGAAGTAAATGACCTACTGCAGCTCGTTGCACA
CACCATTTCCAACCAAGTCACAAATGAAATCATCACATCAACCGGAGGCGACCTGCTGAAAGGGGAAACCGGTTCAAAGG
TGAAGCATTCAAATAACAGCTGTTCTCTCTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVD0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment