Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   ACLII2_RS08195 Genome accession   NZ_CP178213
Coordinates   1557085..1558212 (-) Length   375 a.a.
NCBI ID   WP_004398842.1    Uniprot ID   P45943
Organism   Bacillus subtilis subsp. subtilis strain BM107     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1552085..1563212
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLII2_RS08160 - 1553017..1553496 (+) 480 WP_004399085.1 hypothetical protein -
  ACLII2_RS08165 - 1553512..1553874 (+) 363 WP_003229947.1 hypothetical protein -
  ACLII2_RS08170 - 1553871..1554017 (-) 147 WP_009967791.1 hypothetical protein -
  ACLII2_RS08175 yqcF 1554135..1554713 (-) 579 WP_009967790.1 type VII secretion system immunity protein YqcF -
  ACLII2_RS08180 yqcG 1554728..1556323 (-) 1596 WP_004399034.1 LXG family T7SS effector endonuclease toxin YqcG -
  ACLII2_RS08185 - 1556693..1556851 (-) 159 WP_003245945.1 hypothetical protein -
  ACLII2_RS08190 phrE 1556961..1557095 (-) 135 WP_004398770.1 phosphatase RapE inhibitor PhrE -
  ACLII2_RS08195 rapC 1557085..1558212 (-) 1128 WP_004398842.1 response regulator aspartate phosphatase RapE Regulator
  ACLII2_RS08200 yqcI 1558655..1559419 (+) 765 WP_004398670.1 YqcI/YcgG family protein -
  ACLII2_RS08205 arsR 1559791..1560108 (+) 318 WP_004399122.1 arsenical resistance operon transcriptional regulator ArsR -
  ACLII2_RS08210 arsK 1560169..1560609 (+) 441 WP_003229954.1 ArsI/CadI family heavy metal resistance metalloenzyme -
  ACLII2_RS08215 acr3 1560632..1561672 (+) 1041 WP_004398718.1 arsenite efflux transporter Acr3 -
  ACLII2_RS08220 arsC 1561684..1562103 (+) 420 WP_004398596.1 thioredoxin-dependent arsenate reductase -
  ACLII2_RS08225 - 1562458..1562636 (+) 179 Protein_1611 hypothetical protein -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 44636.38 Da        Isoelectric Point: 7.3392

>NTDB_id=970765 ACLII2_RS08195 WP_004398842.1 1557085..1558212(-) (rapC) [Bacillus subtilis subsp. subtilis strain BM107]
MISITSAEVGMKINEWHRHIQKFNVTDAEMLKAEIERDIEVMEEDQDLLIYYQLMAFRHKIMLEYTLPSDENRMELSEYL
NKIEGHKKKLDNMRAYYYNFFRGMYEFRNGEYTRAITYYKKAERKIPTISDKIEKAEFYFKLSEVYYHMKMTHISMHYAE
LSYNIYKKHELYSVRRIQCHFVIAGNYDDLENHEKALPHLQEALKGAELLKSKNTHIYATAFFNLGNCYHKMDNLNKAAR
YIEQALVQYRKINSDVLPQAYHDLALIYFKQGKKEQAMDCFRKGIRSAVDFKDELFMNLFEALDVLYIRNGDTPKLLNIF
SRLENGKGYPYLEELALLGGNLFDYNGKIEDSIICFKKMVYAQKQISKGECMYEI

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=970765 ACLII2_RS08195 WP_004398842.1 1557085..1558212(-) (rapC) [Bacillus subtilis subsp. subtilis strain BM107]
TTGATATCAATCACATCAGCTGAAGTGGGAATGAAGATTAATGAATGGCATAGGCATATTCAAAAATTCAACGTAACTGA
TGCTGAAATGTTAAAAGCTGAAATAGAACGTGATATAGAGGTTATGGAAGAAGATCAAGACTTGCTTATTTATTATCAAC
TAATGGCCTTTCGCCATAAAATTATGTTGGAATACACGCTGCCATCTGATGAAAACCGAATGGAACTTTCAGAATATTTA
AATAAAATTGAGGGCCATAAGAAAAAATTAGACAATATGCGGGCATATTATTATAACTTCTTCCGCGGGATGTATGAGTT
TAGAAACGGTGAATACACAAGAGCCATTACATATTACAAAAAAGCTGAACGCAAAATTCCTACAATCTCCGACAAGATTG
AAAAAGCTGAGTTTTATTTTAAACTGTCTGAAGTCTATTATCATATGAAAATGACACACATTTCGATGCATTACGCTGAG
CTTTCATACAACATTTATAAGAAACACGAGCTTTACTCTGTTCGTCGTATTCAGTGCCATTTTGTCATTGCCGGTAACTA
CGATGACCTTGAAAATCATGAAAAAGCTCTCCCCCACCTTCAAGAAGCTTTAAAAGGTGCCGAGCTGCTTAAAAGTAAAA
ATACTCATATCTATGCCACTGCGTTTTTCAATCTCGGCAATTGCTATCACAAAATGGACAACTTAAATAAGGCTGCTCGT
TACATCGAACAAGCCTTGGTTCAATACAGAAAAATTAACTCTGACGTACTTCCGCAAGCTTATCATGACCTAGCGTTGAT
TTATTTTAAACAAGGCAAAAAAGAACAAGCAATGGATTGCTTCCGCAAAGGAATCAGAAGTGCTGTAGATTTTAAAGACG
AACTATTTATGAACTTATTTGAAGCATTAGACGTTCTTTATATAAGAAATGGCGATACACCTAAACTTCTCAACATTTTT
TCTCGTTTAGAGAACGGCAAAGGATACCCTTATCTGGAAGAGCTGGCATTGTTAGGAGGCAACCTTTTCGATTATAATGG
AAAAATAGAGGATAGTATCATCTGTTTCAAGAAGATGGTATATGCTCAAAAGCAAATATCGAAAGGGGAATGCATGTATG
AAATCTAA

Domains

Predicted by InterProScan.

Tetratricopeptide repeat (TPR_12)

(184-246)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(4-64)

Tetratricopeptide repeat (TPR_8)

(259-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P45943

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

40.897

100

0.413
  rapF Bacillus subtilis subsp. subtilis str. 168

38.196

100

0.384

Multiple sequence alignment