Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   AACK08_RS07700 Genome accession   NZ_AP029004
Coordinates   1598409..1599452 (-) Length   347 a.a.
NCBI ID   WP_011000966.1    Uniprot ID   Q8Y0M9
Organism   Ralstonia pseudosolanacearum strain MAFF 211519     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1593409..1604452
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AACK08_RS07690 (MAFF211519_15310) - 1595309..1597399 (+) 2091 WP_058908682.1 recombinase -
  AACK08_RS07695 (MAFF211519_15320) rbsK 1597425..1598372 (-) 948 WP_011000965.1 ribokinase -
  AACK08_RS07700 (MAFF211519_15330) cytR 1598409..1599452 (-) 1044 WP_011000966.1 LacI family DNA-binding transcriptional regulator Regulator
  AACK08_RS07705 (MAFF211519_15340) - 1599472..1600518 (-) 1047 WP_071507348.1 ABC transporter permease -
  AACK08_RS07710 (MAFF211519_15350) - 1600508..1602079 (-) 1572 WP_058908683.1 sugar ABC transporter ATP-binding protein -
  AACK08_RS07715 (MAFF211519_15360) - 1602115..1603074 (-) 960 WP_058908684.1 sugar ABC transporter substrate-binding protein -
  AACK08_RS07720 (MAFF211519_15370) iscR 1603482..1604063 (+) 582 WP_011000970.1 Fe-S cluster assembly transcriptional regulator IscR -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37288.37 Da        Isoelectric Point: 6.9310

>NTDB_id=97076 AACK08_RS07700 WP_011000966.1 1598409..1599452(-) (cytR) [Ralstonia pseudosolanacearum strain MAFF 211519]
MATIKDVAALAGVSFTTVSHVINNTRPVNSETRKRVEEAIRATRYVPSAVARSLKHRTTRTIGVLVPTATNPYFAELARG
IEDVCAAAGYSVILCNSDDDPRKQRDYLRVLMEKRVDGLIVSSAGPDNALLDALGESALPVVMVDRPTEGILADQVQIDH
EEGAYLATRHLLELGHRRIACISGPSTLSVTAGRLAGFHRALREAGVPEHAARVAEGDFTSPGGYRAARELLTTGETPTA
IFASNDLMGIGALRAAAELGIAVPKELSIIGFDDIELSRYVYPALSTVGQSIRQLGETTASTLLEHLTDHAARHHHEIPD
APRRIVLPPRLSLRESTAEPARPARAA

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=97076 AACK08_RS07700 WP_011000966.1 1598409..1599452(-) (cytR) [Ralstonia pseudosolanacearum strain MAFF 211519]
ATGGCCACTATCAAGGACGTTGCCGCATTAGCCGGGGTGTCATTCACCACCGTCTCGCATGTCATCAACAACACACGGCC
GGTCAACTCGGAAACGCGCAAGCGCGTGGAAGAGGCCATCCGCGCCACGCGCTATGTACCCAGCGCCGTAGCGCGCTCGC
TCAAGCACCGCACCACGCGCACCATCGGCGTGCTGGTGCCGACCGCCACCAACCCCTACTTCGCCGAACTGGCGCGCGGC
ATCGAAGACGTGTGCGCCGCGGCCGGCTACAGCGTCATCCTGTGCAACTCCGATGACGATCCCCGCAAGCAGCGCGACTA
CCTGCGCGTGCTGATGGAGAAGCGCGTCGACGGCCTCATCGTCAGCAGCGCCGGACCGGACAACGCGCTGCTCGATGCAC
TGGGCGAATCCGCGCTGCCCGTGGTGATGGTGGACCGTCCCACCGAGGGCATCCTGGCCGACCAGGTGCAGATCGACCAT
GAGGAAGGCGCCTACCTGGCGACCCGGCATCTGCTCGAGCTCGGGCACCGCCGCATTGCCTGCATCAGCGGACCGTCGAC
GCTGAGCGTGACCGCCGGGCGGCTGGCGGGCTTTCACCGGGCGCTGCGCGAAGCCGGCGTGCCCGAGCACGCCGCGCGCG
TGGCCGAAGGCGACTTCACCAGCCCCGGCGGCTACCGCGCCGCGCGCGAACTGCTGACCACCGGCGAGACGCCCACCGCC
ATCTTCGCCAGCAACGACCTGATGGGCATCGGCGCGCTGCGTGCGGCCGCCGAGCTGGGCATCGCGGTGCCGAAGGAACT
GTCCATCATCGGCTTCGACGACATCGAGCTGAGCCGCTATGTCTATCCGGCGCTGTCCACGGTGGGCCAGTCGATCCGGC
AACTGGGCGAGACCACGGCCTCGACCCTGCTCGAGCACCTGACCGATCACGCCGCGCGGCATCACCACGAGATCCCCGAC
GCGCCGCGCCGCATCGTGCTGCCGCCGCGCCTGTCGCTGCGCGAGTCGACCGCCGAGCCCGCACGCCCCGCGCGCGCGGC
CTAA

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-337)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8Y0M9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

38.012

98.559

0.375
  cytR Vibrio parahaemolyticus RIMD 2210633

36.55

98.559

0.36

Multiple sequence alignment