Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   ACLII2_RS02350 Genome accession   NZ_CP178213
Coordinates   445264..446397 (+) Length   377 a.a.
NCBI ID   WP_003227715.1    Uniprot ID   P70962
Organism   Bacillus subtilis subsp. subtilis strain BM107     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 440264..451397
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLII2_RS02320 ywmC 441061..441744 (+) 684 WP_003227700.1 vWA domain-containing protein -
  ACLII2_RS02325 - 441875..442015 (+) 141 WP_003227702.1 hypothetical protein -
  ACLII2_RS02330 ywmD 442068..442742 (+) 675 WP_003243553.1 vWA domain-containing protein -
  ACLII2_RS02335 - 442836..442997 (+) 162 WP_003227706.1 hypothetical protein -
  ACLII2_RS02340 fdhD 443243..444031 (+) 789 WP_003227709.1 formate dehydrogenase accessory sulfurtransferase FdhD -
  ACLII2_RS02345 moaA 444047..445072 (+) 1026 WP_003243488.1 GTP 3',8-cyclase MoaA -
  ACLII2_RS02350 rapC 445264..446397 (+) 1134 WP_003227715.1 response regulator aspartate phosphatase RapB Regulator
  ACLII2_RS02355 - 446553..447032 (+) 480 WP_003244390.1 hypothetical protein -
  ACLII2_RS02360 csbD 447105..447293 (+) 189 WP_003227718.1 stress response protein CsbD -
  ACLII2_RS02365 - 447591..447773 (+) 183 WP_003227720.1 transporter substrate-binding protein -
  ACLII2_RS02370 - 447946..448110 (+) 165 WP_015649919.1 hypothetical protein -
  ACLII2_RS02375 ureA 448291..448608 (+) 318 WP_003227724.1 urease subunit gamma -
  ACLII2_RS02380 ureB 448605..448979 (+) 375 WP_003227726.1 urease subunit beta -
  ACLII2_RS02385 ureC 448976..450685 (+) 1710 WP_003243090.1 urease subunit alpha -
  ACLII2_RS02390 ywnA 450820..451221 (+) 402 WP_003227734.1 Rrf2 family transcriptional regulator -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 45037.17 Da        Isoelectric Point: 4.8005

>NTDB_id=970729 ACLII2_RS02350 WP_003227715.1 445264..446397(+) (rapC) [Bacillus subtilis subsp. subtilis strain BM107]
MAAYEIPSSQVGVKINKWYKHILAFQVADAVKLKEEIDLDIEQMEEDQLLLLYYQLISYRHQIMLDYVKPDLHEESQLQY
RELIKTLESNQDSISGLSEYYFHLFRGMYEFEQNNYISAISFYRKAEKMLAFVEDEIERAEFHFKVAEVFYIMKQTHFSM
NHAVQALETYKAHDFYRVRRIQCHFVISGNYIDYRNYEKALEHLDDAYRLALLEGQPRLIGSALYNIGNCYDDKGELDQA
AEYFEKALPVFEDYQLEQLPKALFSLTRVLFKKQDSEAAIRYYEKGIAIAQKRNDFFSLAKYKFLQALYVESVNLNMIQE
VFDYMEEKGLYVYIEEFALDAASYFSHREQYKEAVYFYEKAVSMREMIQRNDCLYEV

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=970729 ACLII2_RS02350 WP_003227715.1 445264..446397(+) (rapC) [Bacillus subtilis subsp. subtilis strain BM107]
ATGGCCGCGTACGAGATCCCGTCATCTCAAGTAGGAGTGAAAATCAATAAGTGGTATAAGCACATTTTAGCATTTCAAGT
GGCTGATGCCGTAAAACTGAAAGAAGAAATTGATCTAGATATCGAACAGATGGAAGAGGATCAGCTGCTTCTCCTGTATT
ATCAGCTGATCAGCTACCGGCACCAAATTATGCTGGATTATGTAAAGCCTGACCTGCACGAGGAATCTCAGCTTCAATAT
CGTGAATTGATCAAAACGCTGGAAAGCAATCAGGACAGCATCTCCGGATTATCTGAGTATTATTTTCACTTGTTTAGAGG
AATGTACGAATTTGAACAGAACAATTACATCTCGGCTATATCCTTTTATCGGAAAGCTGAGAAGATGCTTGCGTTTGTAG
AAGATGAAATTGAAAGAGCGGAATTTCATTTTAAAGTGGCGGAAGTCTTTTATATTATGAAGCAGACGCACTTTTCCATG
AACCATGCCGTACAGGCGCTGGAGACGTATAAGGCTCACGATTTTTACAGAGTCAGAAGAATTCAATGCCATTTCGTCAT
ATCAGGAAACTACATTGACTACAGAAATTATGAAAAAGCGCTTGAACATTTAGATGACGCGTATCGCCTTGCTTTATTGG
AAGGACAGCCCCGTTTGATCGGATCAGCCCTTTATAATATTGGTAATTGCTATGATGACAAGGGGGAGCTGGATCAGGCC
GCCGAATACTTTGAAAAAGCGCTTCCTGTCTTCGAGGATTATCAGCTGGAACAGCTTCCAAAAGCGCTCTTCAGCCTGAC
TCGCGTTCTTTTCAAAAAACAAGATAGCGAAGCCGCGATACGGTACTATGAAAAAGGGATTGCCATTGCCCAAAAACGAA
ACGACTTCTTCAGTCTGGCAAAATATAAATTTCTGCAGGCATTATATGTGGAATCTGTCAATTTGAATATGATTCAAGAA
GTATTTGATTATATGGAAGAAAAGGGCCTGTATGTATATATTGAAGAATTTGCTTTAGATGCTGCCTCTTATTTCAGTCA
TCGCGAACAATATAAAGAAGCGGTGTATTTTTATGAAAAAGCGGTCAGCATGAGAGAGATGATTCAAAGGAACGATTGTT
TATATGAAGTATGA

Domains

Predicted by InterProScan.

MalT-like TPR region (TPR_MalT)

(154-305)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P70962

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

42.632

100

0.43
  rapF Bacillus subtilis subsp. subtilis str. 168

42.667

99.469

0.424

Multiple sequence alignment