Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   WIF35_RS11955 Genome accession   NZ_CP150631
Coordinates   2450265..2451341 (-) Length   358 a.a.
NCBI ID   WP_412478441.1    Uniprot ID   -
Organism   Azonexus sp. IMCC34839     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2445265..2456341
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WIF35_RS11940 - 2445748..2446455 (+) 708 WP_412478438.1 16S rRNA pseudouridine(516) synthase -
  WIF35_RS11945 - 2446452..2447366 (+) 915 WP_412478439.1 hydrogen peroxide-inducible genes activator -
  WIF35_RS11950 - 2447658..2450186 (-) 2529 WP_412478440.1 DNA topoisomerase III -
  WIF35_RS11955 dprA 2450265..2451341 (-) 1077 WP_412478441.1 DNA-processing protein DprA Machinery gene
  WIF35_RS11960 - 2451338..2452360 (-) 1023 WP_412478442.1 LysM peptidoglycan-binding domain-containing protein -
  WIF35_RS11965 def 2452505..2453008 (+) 504 WP_412478443.1 peptide deformylase -
  WIF35_RS11970 fmt 2453005..2453928 (+) 924 WP_412478444.1 methionyl-tRNA formyltransferase -
  WIF35_RS11975 htpX 2453987..2454844 (+) 858 WP_412478445.1 zinc metalloprotease HtpX -
  WIF35_RS11980 speD 2454845..2455228 (-) 384 WP_412478446.1 adenosylmethionine decarboxylase -
  WIF35_RS11985 - 2455238..2456119 (-) 882 WP_412478447.1 S1/P1 nuclease -

Sequence

Protein


Download         Length: 358 a.a.        Molecular weight: 38076.70 Da        Isoelectric Point: 5.4290

>NTDB_id=970729 WIF35_RS11955 WP_412478441.1 2450265..2451341(-) (dprA) [Azonexus sp. IMCC34839]
MIHTKGLAAWLRLTLIPEIGGETQRKLLAAFGLPEAVFSAGRLEVRSVIGSRADLLFDFDATDTIDAALRWQEHPEQHIV
TLADEAYPQSLLQASDPPTLLYVRGRIELINHPSLAIVGSRNPTPQGLKTAESFSRSLAAQKLCIVSGLALGIDAAAHRG
ALAAEGETIAVIGTGPDRIYPARNKELAIAIAERGAIISEFPLGTPPLASNFPRRNRIISGLSRGVLVVEAAPESGSLIT
ARLAAEQGREVFAIPGSIHSPMSRGCHKLIKQGAKLVETAEDVLEELGGIVAPQAPEKLPEDVPDHPILSTLGHGPCSLD
ELAERTGLSADQLLPELLTLELEGLVATLPGNRFQRLG

Nucleotide


Download         Length: 1077 bp        

>NTDB_id=970729 WIF35_RS11955 WP_412478441.1 2450265..2451341(-) (dprA) [Azonexus sp. IMCC34839]
ATGATTCACACCAAAGGGTTGGCCGCCTGGTTGCGGCTGACCCTGATCCCCGAAATCGGCGGCGAGACGCAAAGAAAGCT
TCTCGCCGCTTTCGGTTTACCCGAGGCTGTTTTCTCTGCCGGCAGACTTGAGGTACGGAGCGTCATCGGCAGTCGAGCCG
ATCTGCTGTTCGACTTCGATGCTACGGACACCATTGATGCCGCCCTGCGCTGGCAGGAACATCCTGAACAACACATCGTC
ACATTGGCCGACGAGGCTTACCCGCAATCGCTGCTGCAGGCCAGCGACCCACCGACACTGCTCTATGTTCGTGGCCGGAT
CGAATTGATCAATCACCCATCGCTGGCCATCGTTGGTAGCCGCAATCCGACGCCGCAAGGGCTCAAAACGGCAGAAAGCT
TCTCCCGCAGCCTGGCAGCGCAGAAGCTCTGCATCGTCAGCGGACTGGCCCTGGGTATCGATGCGGCAGCTCATCGCGGC
GCCCTCGCTGCAGAAGGCGAAACGATAGCCGTCATCGGAACCGGCCCTGATCGCATCTACCCCGCCCGCAATAAAGAACT
GGCGATTGCGATCGCTGAACGCGGGGCGATCATTTCGGAATTTCCACTGGGCACCCCACCACTGGCATCGAATTTCCCGC
GCCGCAACCGCATCATTTCCGGCCTGTCGCGCGGGGTGCTGGTCGTTGAAGCGGCTCCGGAAAGCGGCTCCCTGATCACC
GCACGCTTGGCCGCAGAGCAAGGCCGGGAAGTTTTCGCCATTCCCGGCTCGATTCACTCGCCCATGTCACGCGGTTGCCA
TAAGCTGATCAAACAGGGCGCCAAGCTGGTAGAAACGGCGGAGGATGTTCTTGAAGAACTTGGTGGCATCGTTGCGCCAC
AAGCACCCGAGAAGCTTCCGGAAGATGTCCCCGACCATCCAATATTGAGTACCTTGGGACACGGCCCCTGCAGTCTCGAT
GAACTTGCCGAAAGAACCGGCCTGAGTGCCGACCAATTGTTGCCGGAGCTCCTCACCCTGGAGCTCGAAGGGCTGGTCGC
CACGCTTCCGGGAAACCGTTTTCAACGCCTCGGTTAA

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(293-352)

DNA recombination-mediator protein A (DNA_processg_A)

(76-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Neisseria meningitidis strain C311

45.361

100

0.492
  dprA Neisseria meningitidis MC58

45.361

100

0.492
  dprA Neisseria gonorrhoeae MS11

44.041

100

0.475
  dprA Neisseria gonorrhoeae strain FA1090

43.782

100

0.472
  dprA Vibrio campbellii strain DS40M4

43.767

100

0.441
  dprA Vibrio cholerae strain A1552

40.379

100

0.416
  dprA Legionella pneumophila strain ERS1305867

47.855

84.637

0.405
  dprA Acinetobacter baumannii D1279779

40.87

96.369

0.394
  dprA Acinetobacter baumannii strain A118

40.58

96.369

0.391
  dprA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

38.889

100

0.391
  dprA Haemophilus influenzae Rd KW20

40.525

95.81

0.388
  dprA Glaesserella parasuis strain SC1401

46.713

80.726

0.377

Multiple sequence alignment