Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   R8495_RS02660 Genome accession   NZ_AP026802
Coordinates   528348..530141 (-) Length   597 a.a.
NCBI ID   WP_317636022.1    Uniprot ID   A0AAU9D080
Organism   Xylocopilactobacillus apicola strain XA3     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 523348..535141
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8495_RS02635 (XA3_05370) - 524132..524914 (-) 783 WP_317636017.1 tyrosine-protein phosphatase -
  R8495_RS02640 (XA3_05380) - 525061..525495 (+) 435 WP_317636018.1 universal stress protein -
  R8495_RS02645 (XA3_05390) - 525606..526367 (-) 762 WP_317636019.1 LytTR family DNA-binding domain-containing protein -
  R8495_RS02650 (XA3_05400) - 526739..527014 (-) 276 WP_317636020.1 hypothetical protein -
  R8495_RS02655 (XA3_05410) - 527922..528152 (+) 231 WP_317636021.1 hypothetical protein -
  R8495_RS02660 (XA3_05420) pepF 528348..530141 (-) 1794 WP_317636022.1 oligoendopeptidase F Regulator
  R8495_RS02665 (XA3_05430) - 530449..532020 (+) 1572 WP_317636023.1 helix-turn-helix domain-containing protein -
  R8495_RS02670 (XA3_05440) - 532359..533573 (-) 1215 WP_317634801.1 IS110 family transposase -
  R8495_RS02675 (XA3_05450) deoD 533836..534543 (-) 708 WP_317636024.1 purine-nucleoside phosphorylase -
  R8495_RS02680 (XA3_05460) lepB 534545..535132 (-) 588 WP_317636025.1 signal peptidase I -

Sequence

Protein


Download         Length: 597 a.a.        Molecular weight: 68260.14 Da        Isoelectric Point: 4.7476

>NTDB_id=97071 R8495_RS02660 WP_317636022.1 528348..530141(-) (pepF) [Xylocopilactobacillus apicola strain XA3]
MVQNQRNEIPVEDTWDLTTIFKNDSDFEAAFNKVQELTSAASKYRSTMGADAEHFFGAIEASLKAFRLLETVYVYASMNN
DLDTGNDKYQAYNARVNSLAAQVESALSFIQPEILSIDKKKIAEFLKENPAKEQYAHYLDFIEKKRPHVLNEEAEALISQ
VQDVLNTSAETFSVLSNNDLIFPSIIDEDGQKVRLTNGSYSLHIESYDRKVRKDAFKGMYQAYGDYKNTFAQTLSGQIKA
DNYLAKVHKYPDARSAAMATNNIPAIVYDNLVSAVHEHLDLLHRYVALRKKILQLDEMHMYDLYVPLLSEPPVEYNFEQA
KKRARQALEIYGDEYLDAVDHIYNERMIDVYETKGKRSGGYSGGAYDTNPFILLNYQDTLDDVYTLIHETGHSVHSWLTR
KYQPYVYGDYPIFVAEIASTTNENLLTDDFLANSDDPKLRAYILNHYLDGVKGTVFRQTQFAEFEHYLHTSEQNGIPITA
NGISEYYGKLNADYYGSSVVSDPEISLEWSRIPHFYYDYYVYQYATGFAAATTLSENMLSHQENAVDRYLGFLKSGNSQY
PIETMKAAGVDMTKPDYLNKTFAVFEQRLNELESLIG

Nucleotide


Download         Length: 1794 bp        

>NTDB_id=97071 R8495_RS02660 WP_317636022.1 528348..530141(-) (pepF) [Xylocopilactobacillus apicola strain XA3]
ATGGTTCAAAATCAAAGAAATGAAATTCCAGTCGAGGACACCTGGGACTTAACCACCATTTTTAAAAATGACAGCGACTT
TGAAGCTGCATTTAACAAGGTCCAAGAATTAACGAGCGCCGCAAGCAAGTACCGCTCAACAATGGGAGCGGATGCGGAGC
ATTTTTTCGGGGCAATTGAGGCTAGTCTCAAAGCATTTCGACTGCTTGAAACTGTCTACGTTTACGCCAGTATGAATAAT
GATTTAGACACCGGAAACGATAAATATCAGGCCTACAACGCGCGGGTTAACAGTCTGGCCGCGCAAGTTGAGAGTGCTCT
ATCTTTTATTCAACCTGAAATTTTAAGCATTGACAAAAAGAAAATTGCCGAATTTCTAAAAGAAAATCCTGCCAAAGAAC
AATATGCTCATTATCTTGATTTTATTGAAAAAAAACGTCCCCATGTTTTAAACGAAGAAGCGGAAGCTTTAATCTCGCAG
GTTCAAGATGTGTTGAACACTTCTGCTGAGACATTTTCCGTTCTCTCTAATAACGACTTAATTTTTCCTTCAATTATAGA
TGAAGATGGGCAAAAAGTTCGTTTGACCAACGGTTCTTATAGTCTTCACATTGAATCATATGATCGCAAAGTTAGAAAAG
ATGCTTTTAAAGGAATGTATCAGGCTTATGGCGATTACAAAAATACTTTTGCTCAGACTCTCAGCGGGCAGATTAAAGCT
GACAACTATCTCGCTAAAGTACATAAATACCCCGACGCAAGAAGTGCTGCGATGGCTACTAACAACATTCCAGCAATAGT
TTATGATAACTTAGTTTCTGCCGTTCACGAGCACCTCGATCTTTTACATCGCTATGTTGCCCTTCGTAAAAAAATTCTTC
AACTTGATGAGATGCACATGTACGATCTTTATGTGCCGCTTTTATCTGAACCACCAGTTGAGTACAACTTCGAACAAGCA
AAAAAAAGAGCTCGCCAAGCTCTTGAAATCTACGGCGATGAATATTTAGATGCCGTCGATCATATTTATAATGAAAGAAT
GATTGATGTTTACGAGACCAAAGGGAAGCGATCAGGCGGATATTCCGGCGGAGCGTACGATACTAATCCGTTTATCTTGT
TAAACTATCAAGACACGCTTGATGATGTTTATACTCTCATTCACGAGACTGGACATAGTGTTCACAGCTGGCTCACTCGT
AAATATCAACCATACGTTTACGGTGACTATCCAATTTTCGTAGCTGAAATTGCCTCAACGACAAACGAAAATCTTTTAAC
TGACGACTTTTTAGCGAACTCTGATGATCCTAAATTACGAGCTTACATTCTTAATCACTACTTAGACGGCGTCAAAGGGA
CGGTCTTCCGTCAAACTCAATTTGCTGAATTTGAGCATTACCTCCACACTTCTGAACAAAACGGAATTCCAATTACTGCT
AACGGAATTTCTGAATATTACGGCAAGTTAAATGCTGACTACTATGGCTCTAGCGTCGTAAGCGACCCCGAAATTTCCTT
GGAATGGAGCCGAATTCCTCACTTCTACTATGATTACTACGTCTATCAATACGCGACCGGTTTTGCAGCAGCGACAACTC
TTAGTGAAAACATGCTCAGCCACCAAGAAAACGCGGTCGATCGCTATCTCGGCTTCCTGAAAAGCGGAAATTCTCAATAT
CCAATTGAAACAATGAAGGCAGCGGGCGTCGATATGACTAAACCTGATTACCTCAATAAAACATTTGCTGTCTTTGAACA
AAGATTAAATGAGCTTGAATCATTGATTGGCTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(113-182)

Peptidase family M3 (Peptidase_M3)

(204-583)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

49.916

99.665

0.497

Multiple sequence alignment