Detailed information NTG0970655

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACLSTD_RS04895
• Genome accession: NZ_CP178206
• Coordinates: 1017518..1018510 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081588.1
• Uniprot ID: Q540P0
• Organism: Escherichia coli strain K-12
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1012518..1023510

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACLSTD_RS04865 (ACLSTD_04865)	ispD	1012579..1013289 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
ACLSTD_RS04870 (ACLSTD_04870)	ispF	1013289..1013768 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ACLSTD_RS04875 (ACLSTD_04875)	truD	1013765..1014814 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
ACLSTD_RS04880 (ACLSTD_04880)	surE	1014795..1015556 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
ACLSTD_RS04885 (ACLSTD_04885)	pcm	1015550..1016176 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
ACLSTD_RS04890 (ACLSTD_04890)	nlpD	1016361..1017455 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
ACLSTD_RS04895 (ACLSTD_04895)	rpoS	1017518..1018510 (+)	993	WP_000081588.1	RNA polymerase sigma factor RpoS	Regulator
ACLSTD_RS04900 (ACLSTD_04900)	ygbN	1018604..1019968 (-)	1365	WP_000104441.1	GntP family transporter	-
ACLSTD_RS04905 (ACLSTD_04905)	ygbM	1020057..1020833 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
ACLSTD_RS04910 (ACLSTD_04910)	ygbL	1020838..1021476 (-)	639	WP_001278994.1	aldolase	-
ACLSTD_RS04915 (ACLSTD_04915)	otnK	1021568..1022734 (-)	1167	WP_001393459.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37971.86 Da
• Isoelectric Point: 4.5886

>NTDB_id=970655 ACLSTD_RS04895 WP_000081588.1 1017518..1018510(+) (rpoS) [Escherichia coli strain K-12]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=970655 ACLSTD_RS04895 WP_000081588.1 1017518..1018510(+) (rpoS) [Escherichia coli strain K-12]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAACAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

• Sigma-70 region 3 (Sigma70_r3) (174-248)

3D structure

• AlphaFold DB: Q540P0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715