Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   WHC13_RS19180 Genome accession   NZ_CP150487
Coordinates   3640725..3641447 (-) Length   240 a.a.
NCBI ID   WP_003227991.1    Uniprot ID   A0AAE2SKX0
Organism   Bacillus subtilis strain JNF2     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3635725..3646447
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHC13_RS19145 (WHC13_19145) fliW 3635864..3636295 (-) 432 WP_003228007.1 flagellar assembly protein FliW -
  WHC13_RS19150 (WHC13_19150) yviE 3636316..3636891 (-) 576 WP_003243053.1 DUF6470 family protein -
  WHC13_RS19155 (WHC13_19155) flgL 3636938..3637834 (-) 897 WP_003228004.1 flagellar hook-associated protein FlgL -
  WHC13_RS19160 (WHC13_19160) flgK 3637845..3639368 (-) 1524 WP_003228001.1 flagellar hook-associated protein FlgK -
  WHC13_RS19165 (WHC13_19165) flgN 3639387..3639869 (-) 483 WP_003227999.1 flagellar protein FlgN -
  WHC13_RS19170 (WHC13_19170) flgM 3639885..3640151 (-) 267 WP_003227997.1 flagellar biosynthesis anti-sigma factor FlgM -
  WHC13_RS19175 (WHC13_19175) yvyF 3640232..3640651 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  WHC13_RS19180 (WHC13_19180) comFC 3640725..3641447 (-) 723 WP_003227991.1 comF operon protein ComFC Machinery gene
  WHC13_RS19185 (WHC13_19185) comFB 3641411..3641707 (-) 297 WP_003227989.1 late competence protein ComFB -
  WHC13_RS19190 (WHC13_19190) comFA 3641767..3643158 (-) 1392 WP_003243962.1 ATP-dependent helicase ComFA Machinery gene
  WHC13_RS19195 (WHC13_19195) fakBA 3643264..3644109 (-) 846 WP_003244125.1 DegV family protein -
  WHC13_RS19200 (WHC13_19200) degU 3644207..3644896 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  WHC13_RS19205 (WHC13_19205) degS 3644979..3646136 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27477.75 Da        Isoelectric Point: 9.0021

>NTDB_id=970618 WHC13_RS19180 WP_003227991.1 3640725..3641447(-) (comFC) [Bacillus subtilis strain JNF2]
MSNEAGGGIHKLICLLCDSQFSQDVTWRALFLLKPDEKVCYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEVWRTRIRD
SLLLRQNRSVYTYNDMMKETLSRFKFRGDAEIINAFKSDFSSTFSKVYPDKHFVLVPIPLSKEREEERGFNQAHLLAECL
DRPSHHPLIRLNNEKQSKKKKTERLLSECIFDTKNNSAEGMNIILIDDLYTTGATLHFAARCLLEKGKAASVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=970618 WHC13_RS19180 WP_003227991.1 3640725..3641447(-) (comFC) [Bacillus subtilis strain JNF2]
ATGTCAAACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCCCTTTTTTTACTAAAGCCTGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGTGTGGAGAACAAGGATCAGAGAC
AGTTTGCTATTGCGTCAAAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAACGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTTTCTAAGGTTTACCCCGATAAGCATTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGATTTAACCAGGCACATCTCTTGGCAGAATGTTTA
GACCGGCCTTCCCACCATCCCCTCATTCGCCTGAATAATGAGAAACAGTCAAAGAAAAAGAAAACAGAACGCCTGCTGTC
AGAGTGCATTTTTGATACAAAAAATAATTCAGCAGAAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACCTTGCACTTCGCAGCCCGCTGCTTATTAGAAAAAGGAAAAGCCGCTTCAGTGTCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment