Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   ACLSTA_RS19065 Genome accession   NZ_CP178203
Coordinates   3823682..3824674 (-) Length   330 a.a.
NCBI ID   WP_000081550.1    Uniprot ID   A0A370V765
Organism   Escherichia coli strain APEC17     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 3818682..3829674
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLSTA_RS19040 (ACLSTA_19040) ygbN 3819338..3820702 (+) 1365 WP_000104432.1 GntP family transporter -
  ACLSTA_RS19045 (ACLSTA_19045) - 3820740..3820976 (-) 237 WP_000562976.1 non-oxidative hydroxyarylic acid decarboxylases subunit D -
  ACLSTA_RS19050 (ACLSTA_19050) - 3820987..3822414 (-) 1428 WP_025491880.1 non-oxidative hydroxyarylic acid decarboxylases subunit C -
  ACLSTA_RS19055 (ACLSTA_19055) - 3822414..3823007 (-) 594 WP_000767730.1 non-oxidative hydroxyarylic acid decarboxylases subunit B -
  ACLSTA_RS19060 (ACLSTA_19060) - 3823154..3823561 (+) 408 WP_001208064.1 MarR family winged helix-turn-helix transcriptional regulator -
  ACLSTA_RS19065 (ACLSTA_19065) rpoS 3823682..3824674 (-) 993 WP_000081550.1 RNA polymerase sigma factor RpoS Regulator
  ACLSTA_RS19070 (ACLSTA_19070) nlpD 3824737..3825831 (-) 1095 WP_306174120.1 murein hydrolase activator NlpD -
  ACLSTA_RS19075 (ACLSTA_19075) pcm 3826016..3826642 (-) 627 WP_000254701.1 protein-L-isoaspartate O-methyltransferase -
  ACLSTA_RS19080 (ACLSTA_19080) surE 3826636..3827397 (-) 762 WP_001295182.1 5'/3'-nucleotidase SurE -
  ACLSTA_RS19085 (ACLSTA_19085) truD 3827378..3828427 (-) 1050 WP_000568955.1 tRNA pseudouridine(13) synthase TruD -
  ACLSTA_RS19090 (ACLSTA_19090) ispF 3828424..3828903 (-) 480 WP_001219237.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  ACLSTA_RS19095 (ACLSTA_19095) ispD 3828903..3829613 (-) 711 WP_000246133.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 37972.84 Da        Isoelectric Point: 4.5597

>NTDB_id=970599 ACLSTA_RS19065 WP_000081550.1 3823682..3824674(-) (rpoS) [Escherichia coli strain APEC17]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide


Download         Length: 993 bp        

>NTDB_id=970599 ACLSTA_RS19065 WP_000081550.1 3823682..3824674(-) (rpoS) [Escherichia coli strain APEC17]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGCGAGTTGTCCCA
TAAACTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

Sigma-70 region 3 (Sigma70_r3)

(174-248)

Sigma-70 region 2 (Sigma70_r2)

(94-163)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(56-88)

Sigma-70, region 4 (Sigma70_r4)

(262-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V765

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

73.065

97.879

0.715

Multiple sequence alignment