Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   WHC13_RS13180 Genome accession   NZ_CP150487
Coordinates   2517622..2518425 (-) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus subtilis strain JNF2     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2512622..2523425
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHC13_RS13155 (WHC13_13155) glpQ 2513768..2514499 (-) 732 WP_003230288.1 glycerophosphodiester phosphodiesterase -
  WHC13_RS13160 (WHC13_13160) yqiI 2514578..2515198 (-) 621 WP_010886565.1 N-acetylmuramoyl-L-alanine amidase -
  WHC13_RS13165 (WHC13_13165) yqiH 2515213..2515506 (-) 294 WP_003230284.1 lipoprotein -
  WHC13_RS13170 (WHC13_13170) - 2515814..2515966 (+) 153 WP_003230276.1 hypothetical protein -
  WHC13_RS13175 (WHC13_13175) yqiG 2516039..2517157 (+) 1119 WP_004398691.1 NADH-dependent flavin oxidoreductase -
  WHC13_RS13180 (WHC13_13180) spo0A 2517622..2518425 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  WHC13_RS13185 (WHC13_13185) spoIVB 2518701..2519981 (-) 1281 WP_004398697.1 SpoIVB peptidase -
  WHC13_RS13190 (WHC13_13190) recN 2520156..2521886 (-) 1731 WP_003230267.1 DNA repair protein RecN Machinery gene
  WHC13_RS13195 (WHC13_13195) argR 2521923..2522372 (-) 450 WP_003230265.1 arginine repressor ArgR -
  WHC13_RS13200 (WHC13_13200) yqxC 2522470..2523315 (-) 846 WP_003230264.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=970588 WHC13_RS13180 WP_003226427.1 2517622..2518425(-) (spo0A) [Bacillus subtilis strain JNF2]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=970588 WHC13_RS13180 WP_003226427.1 2517622..2518425(-) (spo0A) [Bacillus subtilis strain JNF2]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATCTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGGCAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTTAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGCCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTTGGTTATACTGTC
AGCATGACAAAAGCTAAACCTACCAACAGTGAATTCATTGCAATGGTTGCGGATAAGCTGAGGTTAGAGCATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment