Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   WHC13_RS12195 Genome accession   NZ_CP150487
Coordinates   2340408..2341028 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis strain JNF2     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2335408..2346028
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHC13_RS12155 (WHC13_12155) ypqE 2336539..2337045 (-) 507 WP_009967573.1 glucose PTS transporter subunit IIA -
  WHC13_RS12160 (WHC13_12160) ypqA 2337183..2337602 (+) 420 WP_004398640.1 Hsp20/alpha crystallin family protein -
  WHC13_RS12165 (WHC13_12165) yppG 2337623..2338000 (-) 378 WP_004398696.1 YppG family protein -
  WHC13_RS12170 (WHC13_12170) yppF 2338188..2338376 (+) 189 WP_003230690.1 YppF family protein -
  WHC13_RS12175 (WHC13_12175) yppE 2338415..2338786 (-) 372 WP_003246080.1 YppE family protein -
  WHC13_RS12180 (WHC13_12180) yppD 2338832..2339077 (-) 246 WP_004398488.1 YppD family protein -
  WHC13_RS12185 (WHC13_12185) sspM 2339276..2339380 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  WHC13_RS12190 (WHC13_12190) yppC 2339405..2340367 (-) 963 WP_004398707.1 DUF2515 domain-containing protein -
  WHC13_RS12195 (WHC13_12195) recU 2340408..2341028 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  WHC13_RS12200 (WHC13_12200) ponA 2341050..2343794 (+) 2745 WP_004398589.1 PBP1A family penicillin-binding protein -
  WHC13_RS12205 (WHC13_12205) ypoC 2343870..2344364 (-) 495 WP_009967579.1 YpoC family protein -
  WHC13_RS12210 (WHC13_12210) nth 2344361..2345020 (-) 660 WP_009967580.1 endonuclease III -
  WHC13_RS12215 (WHC13_12215) dnaD 2345039..2345737 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=970587 WHC13_RS12195 WP_004399067.1 2340408..2341028(+) (recU) [Bacillus subtilis strain JNF2]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=970587 WHC13_RS12195 WP_004399067.1 2340408..2341028(+) (recU) [Bacillus subtilis strain JNF2]
GTGATTCGGTATCCTAATGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment