Detailed information NTG0970522

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: SOZ35_RS19605
• Genome accession: NZ_CP150480
• Coordinates: 3862966..3864108 (+)
• Length: 380 a.a.
• NCBI ID: WP_199679886.1
• Uniprot ID: -
• Organism: Bacillus atrophaeus strain TL401
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3857966..3869108

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SOZ35_RS19585 (SOZ35_19585)	-	3858737..3858991 (-)	255	Protein_3809	YncE family protein	-
SOZ35_RS19590 (SOZ35_19590)	-	3859139..3860515 (-)	1377	WP_340639947.1	YncE family protein	-
SOZ35_RS19595 (SOZ35_19595)	-	3860555..3861916 (-)	1362	WP_340639948.1	YncE family protein	-
SOZ35_RS19600 (SOZ35_19600)	-	3862199..3862753 (+)	555	WP_010790244.1	YdhK family protein	-
SOZ35_RS19605 (SOZ35_19605)	rapF	3862966..3864108 (+)	1143	WP_199679886.1	tetratricopeptide repeat protein	Regulator
SOZ35_RS19610 (SOZ35_19610)	-	3864092..3864211 (+)	120	WP_003326489.1	PhrC/PhrF family phosphatase-inhibitory pheromone	-
SOZ35_RS19615 (SOZ35_19615)	-	3864310..3864618 (+)	309	WP_340639949.1	YbaK/EbsC family protein	-
SOZ35_RS19620 (SOZ35_19620)	speB	3864808..3865680 (-)	873	WP_106272842.1	agmatinase	-
SOZ35_RS19625 (SOZ35_19625)	speE	3865741..3866571 (-)	831	WP_003326486.1	spermidine synthase	-
SOZ35_RS19630 (SOZ35_19630)	-	3866776..3868851 (+)	2076	WP_340639950.1	transglycosylase domain-containing protein	-

Sequence

Protein

• Length: 380 a.a.
• Molecular weight: 45523.29 Da
• Isoelectric Point: 5.1491

>NTDB_id=970522 SOZ35_RS19605 WP_199679886.1 3862966..3864108(+) (rapF) [Bacillus atrophaeus strain TL401]
MTGVISSSIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQIEEDQDIYLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRL
SDLLLEIDKKQARLTGLLEYYFNFFRGMYELDHREYILAIQFFKKAESKLTFVKDKIDKAEFFFKMSEVYYYMKQTYVSM
DYARQAFEIYNEQTTYGIRMIQCQSLFGANFLDLKQYDKAIAHFQKAYTLAEAEQQPQLMGRTLYNIALCKQNQHSFESA
IEYVKKSIHVFEKSKMLPSLPQAFFLITQIYFKLGKIDNACEYHKKGREYSIAAGDTVYLMEFEFLESLYLSGPDEEAIK
KCFVFLESKMMYADIEDFALDVAKYYHQQECYKKASTYFLKVEEARQHIQGGVNLYEMEV

Nucleotide

• Length: 1143 bp

>NTDB_id=970522 SOZ35_RS19605 WP_199679886.1 3862966..3864108(+) (rapF) [Bacillus atrophaeus strain TL401]
GTGACAGGCGTCATATCTTCTTCCATTGGAGAAAAGATTAATGAATGGTACATGTACATACGCCGATTCAGCATACCGGA
TGCGGAATATTTACGAAGAGAAATCAAACAAGAGCTGGATCAAATAGAAGAAGACCAGGATATTTATTTGTATTATTCAC
TGATGGAATTCCGGCACAATCTGATGCTTGAGTATCTAGAACCGTTAGAAAAAATGCGGATAGAGGAACAGCCGCGACTG
TCCGATTTGCTGCTTGAAATCGATAAAAAACAGGCTCGTTTAACCGGACTGCTTGAATACTATTTTAATTTCTTCAGAGG
TATGTATGAACTGGACCACCGCGAATATATATTAGCCATTCAATTTTTCAAAAAAGCAGAGAGCAAACTGACTTTTGTTA
AAGATAAAATTGATAAAGCTGAATTCTTTTTCAAAATGTCAGAAGTTTATTACTATATGAAGCAAACTTATGTGTCCATG
GACTATGCACGTCAAGCCTTTGAAATATACAATGAACAAACTACATATGGTATCAGAATGATTCAATGCCAGTCCCTGTT
TGGAGCTAACTTTTTGGACCTGAAACAGTATGATAAAGCAATTGCTCATTTCCAAAAAGCTTATACACTTGCTGAGGCAG
AACAGCAGCCGCAACTAATGGGAAGAACGCTTTATAATATTGCCCTTTGCAAGCAAAACCAACACAGCTTTGAATCAGCG
ATAGAGTATGTAAAAAAATCTATTCATGTATTTGAAAAATCTAAAATGCTTCCTTCACTGCCACAAGCCTTTTTCCTAAT
TACACAAATTTATTTTAAATTAGGTAAGATTGATAACGCTTGTGAATATCATAAAAAAGGAAGAGAATATTCAATAGCTG
CCGGAGACACTGTGTATTTAATGGAGTTTGAATTTTTAGAATCTTTATACTTGTCTGGACCTGATGAAGAAGCAATCAAA
AAATGTTTTGTTTTCCTTGAAAGTAAAATGATGTATGCTGATATTGAAGACTTTGCACTCGATGTTGCTAAGTATTATCA
TCAGCAGGAATGTTATAAAAAAGCATCTACTTACTTTTTAAAGGTTGAAGAAGCAAGACAGCACATTCAAGGGGGGGTGA
ATTTATATGAAATGGAAGTATAA

Domains

Predicted by InterproScan.

• Tetratricopeptide repeat (TPR_12) (188-251)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (6-64)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	79.528	100	0.797
rapC	Bacillus subtilis subsp. subtilis str. 168	56.579	100	0.566