Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   R8749_RS02845 Genome accession   NZ_AP026801
Coordinates   617527..619317 (-) Length   596 a.a.
NCBI ID   WP_317697866.1    Uniprot ID   A0AAU9D5D3
Organism   Xylocopilactobacillus apis strain KimC2     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 612527..624317
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8749_RS02825 (KIMC2_05850) - 612985..613923 (+) 939 WP_317697862.1 alpha/beta hydrolase -
  R8749_RS02830 (KIMC2_05860) - 613926..615248 (-) 1323 WP_317697863.1 CBS domain-containing protein -
  R8749_RS02835 (KIMC2_05870) - 615264..616835 (-) 1572 WP_317697864.1 hypothetical protein -
  R8749_RS02840 (KIMC2_05880) - 617032..617466 (+) 435 WP_317697865.1 universal stress protein -
  R8749_RS02845 (KIMC2_05890) pepF 617527..619317 (-) 1791 WP_317697866.1 oligoendopeptidase F Regulator
  R8749_RS02850 (KIMC2_05900) - 619692..621254 (+) 1563 WP_317697868.1 helix-turn-helix domain-containing protein -
  R8749_RS02855 (KIMC2_05910) lepB 621325..621912 (-) 588 WP_317697870.1 signal peptidase I -
  R8749_RS02860 (KIMC2_05920) - 622100..622693 (+) 594 WP_317697871.1 helix-turn-helix transcriptional regulator -
  R8749_RS02865 (KIMC2_05930) - 622793..623149 (+) 357 WP_317697872.1 hypothetical protein -
  R8749_RS02870 (KIMC2_05940) - 623171..624061 (+) 891 WP_317697873.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 596 a.a.        Molecular weight: 68434.16 Da        Isoelectric Point: 4.6554

>NTDB_id=97051 R8749_RS02845 WP_317697866.1 617527..619317(-) (pepF) [Xylocopilactobacillus apis strain KimC2]
MAQKSRNEIPEKYTWDLTTIFKTDNDFEDNFKKVQELSDKASKHQGTMATNAETFFSAIESSLAAFQLLEKVYVYASMKN
DLDTSDNKYQGYIARVNALAAQVESTLSFVQPEILSIEPSVIDKFINEKPEYQLYKHYLDYIEKKRPHVLNENEEAIISK
AQDVLSSSSETFAVLANSDLKFPEITDEDGNKVPLSNGSYGLYIESYDRRVRKEAFQGIYSAYGEYKNTFAQTLAGQVKA
DNYLADVHKYPNARSAAIAENNIPETVYDNLVNSVHDHLDLLHRYVALRKKVLKLNEMHMYDLYVPLLDEPPVEYNFDQA
KERARKALEIYGDEYLEAVDHIYNERMIDVYETKGKRSGGYSGGSYDTNPFILLNYQDTLDDVFTLIHETGHSVHSWLTR
KYQPYVYGDYPIFVAEIASTTNENLLTNDFLANSEDPKLKAYILNHYLDGVKGTVFRQTQFAEFEHYLHISQQNGTPITA
DGASEYYGKLNSEYYGDSVISDPEISLEWSRIPHFYYDYYVYQYATGFAAATTLSEAMFNHQNGAVERYLGFLKSGNSKY
AIDTMKEAGVDMTKTDYLDKTFAVFEERLNELEKLI

Nucleotide


Download         Length: 1791 bp        

>NTDB_id=97051 R8749_RS02845 WP_317697866.1 617527..619317(-) (pepF) [Xylocopilactobacillus apis strain KimC2]
ATGGCACAAAAATCAAGAAATGAGATCCCTGAAAAATATACGTGGGATTTAACAACGATCTTTAAAACCGACAACGACTT
TGAAGACAATTTCAAAAAAGTTCAAGAATTATCAGACAAAGCCAGTAAACATCAAGGTACGATGGCTACTAATGCTGAAA
CATTTTTCAGTGCGATTGAATCCAGCTTAGCTGCTTTTCAGCTGCTTGAGAAAGTTTATGTGTATGCAAGCATGAAAAAT
GACCTTGATACAAGCGACAACAAATATCAGGGCTATATTGCGAGAGTCAACGCTTTAGCTGCCCAAGTTGAAAGTACACT
ATCTTTTGTTCAGCCTGAAATTCTTAGTATCGAGCCTAGTGTAATTGATAAATTTATAAATGAAAAGCCTGAATATCAAC
TTTACAAACATTATCTCGACTACATTGAAAAGAAAAGGCCTCACGTTCTTAATGAAAATGAGGAGGCAATAATCTCAAAA
GCGCAAGATGTTCTCAGTTCCTCTTCTGAAACGTTTGCGGTTTTGGCAAACTCAGATTTAAAATTTCCCGAAATCACTGA
TGAAGATGGTAATAAAGTTCCGTTGAGCAATGGATCATACGGTCTTTATATTGAATCATATGATCGAAGAGTTAGAAAAG
AAGCATTTCAAGGAATTTATAGTGCTTATGGGGAATATAAAAATACTTTTGCCCAAACTTTAGCGGGACAAGTTAAAGCT
GATAACTATCTAGCAGATGTTCATAAGTACCCTAATGCCCGCAGTGCAGCCATAGCCGAAAATAATATTCCTGAAACAGT
TTATGATAATTTAGTTAACTCGGTTCACGACCATTTAGATCTCTTACATCGTTATGTTGCATTACGTAAAAAGGTTTTAA
AACTTAATGAAATGCATATGTATGATCTATATGTTCCATTATTAGACGAACCACCAGTTGAATATAACTTTGATCAAGCT
AAAGAAAGAGCTCGAAAAGCTCTTGAAATTTATGGTGATGAATATTTAGAAGCAGTTGATCATATATATAATGAAAGAAT
GATTGATGTTTATGAGACAAAAGGTAAACGATCAGGTGGATATTCTGGCGGATCTTACGATACAAATCCTTTTATCCTGT
TAAACTATCAAGATACTCTCGATGACGTTTTTACTTTAATTCATGAAACTGGACATAGTGTTCATAGTTGGTTAACTCGC
AAGTACCAGCCTTATGTTTACGGAGATTATCCGATTTTTGTCGCTGAAATTGCTTCAACTACCAACGAAAATCTGTTAAC
CAATGATTTCTTGGCAAATTCAGAAGATCCAAAATTAAAAGCTTACATTTTAAATCATTACTTAGATGGAGTAAAAGGAA
CAGTTTTCCGGCAAACCCAGTTTGCTGAATTTGAACATTACCTTCATATCTCTCAGCAAAACGGAACTCCAATAACTGCT
GATGGAGCTTCTGAATATTACGGTAAACTTAATTCCGAGTATTACGGTGACAGTGTGATCAGTGATCCTGAAATTTCACT
TGAATGGTCAAGAATTCCTCACTTCTATTATGATTATTATGTTTATCAATATGCGACTGGATTTGCGGCAGCTACTACTC
TATCTGAAGCAATGTTCAATCATCAAAATGGCGCTGTTGAACGTTATCTTGGATTTTTAAAGAGCGGTAATTCAAAATAT
GCGATTGATACCATGAAAGAAGCTGGCGTCGACATGACTAAAACTGATTACTTAGATAAAACCTTTGCAGTTTTTGAAGA
ACGGCTTAATGAATTAGAAAAATTAATTTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(203-583)

Oligopeptidase F (Peptidase_M3_N)

(113-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

49.155

99.329

0.488

Multiple sequence alignment