Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   SOZ35_RS14360 Genome accession   NZ_CP150480
Coordinates   2839017..2839763 (-) Length   248 a.a.
NCBI ID   WP_106270845.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain TL401     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2834017..2844763
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOZ35_RS14335 (SOZ35_14335) mreC 2834413..2835285 (-) 873 WP_010789375.1 rod shape-determining protein MreC -
  SOZ35_RS14340 (SOZ35_14340) mreB 2835316..2836329 (-) 1014 WP_003325239.1 cell shape-determining protein MreB -
  SOZ35_RS14345 (SOZ35_14345) radC 2836421..2837116 (-) 696 WP_003325238.1 DNA repair protein RadC -
  SOZ35_RS14350 (SOZ35_14350) - 2837151..2837720 (-) 570 WP_010789377.1 Maf family nucleotide pyrophosphatase -
  SOZ35_RS14355 (SOZ35_14355) - 2837867..2838883 (-) 1017 WP_340639606.1 SPOR domain-containing protein -
  SOZ35_RS14360 (SOZ35_14360) comC 2839017..2839763 (-) 747 WP_106270845.1 A24 family peptidase Machinery gene
  SOZ35_RS14365 (SOZ35_14365) - 2839917..2841212 (-) 1296 WP_340639607.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  SOZ35_RS14370 (SOZ35_14370) valS 2841270..2843912 (-) 2643 WP_010789381.1 valine--tRNA ligase -
  SOZ35_RS14375 (SOZ35_14375) - 2844359..2844550 (+) 192 WP_010789382.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26823.55 Da        Isoelectric Point: 8.9511

>NTDB_id=970503 SOZ35_RS14360 WP_106270845.1 2839017..2839763(-) (comC) [Bacillus atrophaeus strain TL401]
MVFVMFILGLIFGSFFYAAGCRIPLQISIIKPRSSCSFCRHPLSYAELIPVFSFFLQKGRCKSCAQKLSLMYPAAELWTA
CLFTAAYLRFGLSGELFVALLLISLLSIIVASDIHYMLIPDSVLMFFLPFLIAGRMIAPLPAWYDSLSGAAAGFFMLVLI
AVLSKGGIGGGDIKLFAVLGIALGVKMLIAAFVLAVFIGMLYGACGTLSGKLDRKQPIPFAPAIAAGSLVSYLYGEEILS
LYVKIAMY

Nucleotide


Download         Length: 747 bp        

>NTDB_id=970503 SOZ35_RS14360 WP_106270845.1 2839017..2839763(-) (comC) [Bacillus atrophaeus strain TL401]
ATGGTTTTTGTCATGTTTATCCTCGGTCTCATCTTCGGGTCCTTTTTCTATGCGGCAGGCTGCCGTATCCCCTTACAAAT
CTCCATTATAAAACCGCGCTCATCCTGTTCATTCTGCCGCCATCCGTTGTCTTATGCTGAATTAATCCCGGTTTTCTCTT
TCTTTCTGCAAAAAGGCAGATGTAAAAGCTGTGCACAAAAACTGTCGCTGATGTATCCGGCCGCAGAGCTTTGGACAGCA
TGTTTGTTTACGGCAGCTTATTTGCGTTTCGGTTTATCCGGGGAACTTTTTGTCGCGCTGCTGCTCATATCATTGCTGAG
CATTATCGTGGCATCAGATATTCACTATATGCTGATCCCTGACAGCGTGCTGATGTTTTTTCTCCCTTTTTTGATAGCAG
GAAGAATGATTGCACCGCTTCCTGCTTGGTATGATAGTTTATCAGGAGCAGCAGCCGGTTTTTTCATGCTGGTCTTGATT
GCCGTACTCAGTAAAGGAGGAATCGGGGGCGGCGATATTAAGTTATTTGCCGTTTTGGGTATCGCGCTTGGTGTTAAAAT
GCTGATCGCAGCCTTTGTCCTTGCTGTCTTTATAGGTATGCTGTACGGCGCATGCGGCACGCTGTCAGGAAAGCTCGATC
GAAAACAGCCGATCCCCTTCGCCCCTGCGATAGCTGCCGGAAGCTTGGTAAGTTATTTGTACGGTGAAGAAATATTATCA
CTCTATGTCAAAATCGCCATGTACTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(101-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

62.753

99.597

0.625

Multiple sequence alignment