Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   SOZ35_RS12475 Genome accession   NZ_CP150480
Coordinates   2532807..2533604 (-) Length   265 a.a.
NCBI ID   WP_340639509.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain TL401     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2527807..2538604
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOZ35_RS12450 (SOZ35_12450) - 2528240..2528983 (-) 744 WP_340639505.1 glycerophosphodiester phosphodiesterase -
  SOZ35_RS12455 (SOZ35_12455) - 2529095..2529718 (-) 624 WP_063638526.1 N-acetylmuramoyl-L-alanine amidase -
  SOZ35_RS12460 (SOZ35_12460) - 2529741..2530043 (-) 303 WP_340639506.1 hypothetical protein -
  SOZ35_RS12465 (SOZ35_12465) - 2530499..2531617 (+) 1119 WP_340639507.1 NADH-dependent flavin oxidoreductase -
  SOZ35_RS12470 (SOZ35_12470) - 2531782..2532639 (+) 858 WP_340639508.1 manganese catalase family protein -
  SOZ35_RS12475 (SOZ35_12475) spo0A 2532807..2533604 (-) 798 WP_340639509.1 sporulation transcription factor Spo0A Regulator
  SOZ35_RS12480 (SOZ35_12480) spoIVB 2533887..2535167 (-) 1281 WP_340639510.1 SpoIVB peptidase -
  SOZ35_RS12485 (SOZ35_12485) recN 2535362..2537092 (-) 1731 WP_311187234.1 DNA repair protein RecN Machinery gene
  SOZ35_RS12490 (SOZ35_12490) argR 2537127..2537576 (-) 450 WP_003325480.1 arginine repressor ArgR -
  SOZ35_RS12495 (SOZ35_12495) - 2537675..2538520 (-) 846 WP_340639511.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 265 a.a.        Molecular weight: 29556.99 Da        Isoelectric Point: 6.4134

>NTDB_id=970484 SOZ35_RS12475 WP_340639509.1 2532807..2533604(-) (spo0A) [Bacillus atrophaeus strain TL401]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGMAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLSKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNSSSVTHRAPSSHGSIIRNHEPKRKNLDASITSIIH
EIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVSM
TKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 798 bp        

>NTDB_id=970484 SOZ35_RS12475 WP_340639509.1 2532807..2533604(-) (spo0A) [Bacillus atrophaeus strain TL401]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTCGTAAGCCTGTTGAGTGAATATATAGAGGGTCAGGA
AGATATGGAAGTCATCGGCATGGCTTATAATGGCCAGGAATGTCTGTCTTTATTTAAAGAAAAAGATCCTGATGTTCTTG
TCTTAGATATTATAATGCCGCATTTAGACGGACTTGCGGTATTGGAACGGCTCAGGGAGTCAGATCTTTCAAAGCAGCCG
AATGTGATCATGCTGACAGCGTTCGGACAGGAAGACGTTACGAAAAAAGCCGTCGATTTAGGCGCGTCTTATTTTATCCT
AAAGCCGTTTGATATGGAAAACCTTGTCGGACATATCCGCCAAGTCAGCGGAAATTCGAGCAGTGTGACACATCGCGCGC
CTTCATCACATGGCAGCATCATAAGAAATCATGAGCCGAAACGGAAAAATCTCGACGCCAGCATAACAAGCATCATTCAC
GAAATCGGCGTCCCGGCACATATCAAAGGGTATCTCTACCTGCGCGAAGCCATCTCAATGGTCTACAACGATATCGAATT
GCTCGGCAGCATCACGAAAGTACTCTATCCCGATATCGCCAAAAAATTCAACACCACTGCAAGCCGTGTAGAAAGAGCGA
TCCGCCATGCGATTGAAGTGGCATGGAGCAGAGGGAATATCGATTCGATTTCTTCATTGTTTGGGTACACAGTGAGCATG
ACGAAGGCAAAACCTACAAACTCAGAATTCATTGCGATGGTGGCTGATAAGCTGAGACTTGAGCATAAAGCAAGCTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-119)

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(155-258)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

96.255

100

0.97

Multiple sequence alignment