Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   SOZ35_RS11420 Genome accession   NZ_CP150480
Coordinates   2324718..2325326 (+) Length   202 a.a.
NCBI ID   WP_010789030.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain TL401     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2319718..2330326
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOZ35_RS11380 (SOZ35_11380) - 2320827..2321333 (-) 507 WP_003325657.1 PTS glucose transporter subunit IIA -
  SOZ35_RS11385 (SOZ35_11385) - 2321483..2321902 (+) 420 WP_061670115.1 Hsp20/alpha crystallin family protein -
  SOZ35_RS11390 (SOZ35_11390) - 2321922..2322311 (-) 390 WP_003325655.1 YppG family protein -
  SOZ35_RS11395 (SOZ35_11395) - 2322501..2322689 (+) 189 WP_035175493.1 YppF family protein -
  SOZ35_RS11400 (SOZ35_11400) - 2322720..2323094 (-) 375 WP_003325652.1 YppE family protein -
  SOZ35_RS11405 (SOZ35_11405) - 2323136..2323381 (-) 246 WP_003325651.1 DUF5446 family protein -
  SOZ35_RS11410 (SOZ35_11410) sspM 2323582..2323686 (+) 105 WP_340639468.1 acid-soluble spore protein SspM -
  SOZ35_RS11415 (SOZ35_11415) - 2323713..2324675 (-) 963 WP_106033547.1 DUF2515 domain-containing protein -
  SOZ35_RS11420 (SOZ35_11420) recU 2324718..2325326 (+) 609 WP_010789030.1 Holliday junction resolvase RecU Machinery gene
  SOZ35_RS11425 (SOZ35_11425) - 2325364..2328114 (+) 2751 WP_268486829.1 PBP1A family penicillin-binding protein -
  SOZ35_RS11430 (SOZ35_11430) - 2328206..2328697 (-) 492 WP_340639469.1 YpoC family protein -
  SOZ35_RS11435 (SOZ35_11435) nth 2328694..2329353 (-) 660 WP_340639470.1 endonuclease III -
  SOZ35_RS11440 (SOZ35_11440) dnaD 2329372..2330070 (-) 699 WP_035175190.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23625.92 Da        Isoelectric Point: 9.8392

>NTDB_id=970483 SOZ35_RS11420 WP_010789030.1 2324718..2325326(+) (recU) [Bacillus atrophaeus strain TL401]
MIRYPNGKTFQPKKTVSSQNRQKKPLSYSNRGMTLEDDLNETNKYYLAKQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGLYKGRYIDFEAKETKNTTSFPLQNFHDHQIEHMKQVTAQDGICFVIISAFGQVYFLEAEKLFYFWERKE
KNGRKSIRKDELNEAAFPISLGYSPRIDYISIIEQLYFSPNP

Nucleotide


Download         Length: 609 bp        

>NTDB_id=970483 SOZ35_RS11420 WP_010789030.1 2324718..2325326(+) (recU) [Bacillus atrophaeus strain TL401]
GTGATTCGGTATCCCAACGGAAAAACGTTTCAGCCGAAAAAAACGGTTTCATCCCAAAATAGGCAAAAAAAGCCGCTATC
ATACAGTAATCGCGGCATGACCCTCGAAGATGACTTAAATGAAACGAATAAGTATTATCTAGCAAAGCAAATTGCCGTGA
TTCACAAAAAACCGACGCCCGTGCAAATTGTAAATGTCCATTATCCAAAAAGAAGCGCAGCTGTCATCAAAGAAGCCTAT
TTTAAGCAGTCATCAACAACTGACTATAATGGACTTTACAAAGGCCGGTATATTGATTTTGAAGCAAAGGAAACGAAAAA
TACAACCTCCTTCCCTTTGCAAAACTTTCATGATCACCAAATTGAGCATATGAAGCAGGTAACGGCTCAAGACGGAATTT
GTTTTGTTATTATATCCGCTTTCGGCCAAGTTTATTTTTTAGAGGCTGAAAAGCTGTTTTACTTCTGGGAAAGAAAAGAA
AAGAACGGCAGAAAGTCGATTCGGAAAGACGAATTAAATGAAGCCGCTTTTCCAATTTCACTTGGATACTCGCCAAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCAAACCCATAA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

90.547

99.505

0.901

Multiple sequence alignment