Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   SOZ35_RS07870 Genome accession   NZ_CP150480
Coordinates   1536969..1537247 (+) Length   92 a.a.
NCBI ID   WP_003329146.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain TL401     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1531969..1542247
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOZ35_RS07850 (SOZ35_07850) - 1533163..1534077 (+) 915 WP_268375021.1 ketopantoate reductase family protein -
  SOZ35_RS07855 (SOZ35_07855) - 1534109..1535341 (-) 1233 WP_010788481.1 aminopeptidase -
  SOZ35_RS07860 (SOZ35_07860) - 1535443..1535577 (-) 135 WP_010788482.1 protein YkpC -
  SOZ35_RS07865 (SOZ35_07865) mreBH 1535679..1536686 (-) 1008 WP_061670906.1 cell shape-determining protein MreBH -
  SOZ35_RS07870 (SOZ35_07870) abrB 1536969..1537247 (+) 279 WP_003329146.1 transcriptional regulator AbhA Regulator
  SOZ35_RS07875 (SOZ35_07875) - 1537459..1538745 (+) 1287 WP_340640569.1 ATP-binding protein -
  SOZ35_RS07880 (SOZ35_07880) - 1538759..1539598 (+) 840 WP_268540926.1 gamma-glutamylcyclotransferase -
  SOZ35_RS07885 (SOZ35_07885) ktrC 1539648..1540313 (+) 666 WP_010788485.1 Ktr system potassium transporter KtrC -
  SOZ35_RS07890 (SOZ35_07890) ade 1540482..1542209 (+) 1728 WP_268499556.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10211.03 Da        Isoelectric Point: 6.9804

>NTDB_id=970478 SOZ35_RS07870 WP_003329146.1 1536969..1537247(+) (abrB) [Bacillus atrophaeus strain TL401]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGVCLMTGEITTENKEYGNGKIILSPEGAQ
QLLDEIQAALKA

Nucleotide


Download         Length: 279 bp        

>NTDB_id=970478 SOZ35_RS07870 WP_003329146.1 1536969..1537247(+) (abrB) [Bacillus atrophaeus strain TL401]
ATGAAATCAATTGGTGTTGTAAGAAAAGTAGATGAACTTGGCCGTATTGTTATGCCGATAGAATTAAGAAGAGCGTTAGA
TATTGCGATTAAAGACAGTATTGAGTTCTTTGTAGACGGAGATAAAATCGTCTTGAAAAAATATAAGCCGCACGGCGTGT
GTTTAATGACAGGGGAAATTACGACAGAAAATAAAGAATACGGCAATGGAAAAATCATTTTAAGTCCAGAAGGCGCACAA
CAGCTGCTTGACGAAATTCAAGCTGCTTTAAAAGCATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)

AbrB C-terminal domain (AbrB_C)

(53-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576

Multiple sequence alignment