Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   VT188_RS09230 Genome accession   NZ_CP177358
Coordinates   1963393..1963722 (+) Length   109 a.a.
NCBI ID   WP_023115163.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain CWC0815     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1958393..1968722
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VT188_RS09215 (VT188_009215) - 1959093..1960052 (+) 960 WP_071537470.1 UDP-glucose 4-epimerase family protein -
  VT188_RS09220 (VT188_009220) - 1960049..1961074 (+) 1026 WP_033940166.1 MraY family glycosyltransferase -
  VT188_RS09225 (VT188_009225) - 1961205..1963202 (+) 1998 WP_023085415.1 polysaccharide biosynthesis protein -
  VT188_RS09230 (VT188_009230) comEA/comE1 1963393..1963722 (+) 330 WP_023115163.1 ComEA family DNA-binding protein Machinery gene
  VT188_RS09240 (VT188_009240) - 1963939..1965135 (-) 1197 WP_003104588.1 amino acid aminotransferase -
  VT188_RS09245 (VT188_009245) uvrB 1965323..1967335 (+) 2013 WP_003104590.1 excinuclease ABC subunit UvrB Machinery gene

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11293.27 Da        Isoelectric Point: 9.1462

>NTDB_id=970473 VT188_RS09230 WP_023115163.1 1963393..1963722(+) (comEA/comE1) [Pseudomonas aeruginosa strain CWC0815]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLAATTPATTVSPGEQVNINTVDAAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRARIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=970473 VT188_RS09230 WP_023115163.1 1963393..1963722(+) (comEA/comE1) [Pseudomonas aeruginosa strain CWC0815]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGACG
CGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGGCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

41.346

95.413

0.394