Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   SOZ35_RS06505 Genome accession   NZ_CP150480
Coordinates   1287533..1287958 (+) Length   141 a.a.
NCBI ID   WP_081250945.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain TL401     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1282533..1292958
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOZ35_RS06455 (SOZ35_06455) - 1283009..1283236 (+) 228 WP_231104726.1 hypothetical protein -
  SOZ35_RS06460 (SOZ35_06460) - 1284204..1284431 (+) 228 WP_340640483.1 hypothetical protein -
  SOZ35_RS06465 (SOZ35_06465) - 1284515..1284772 (+) 258 WP_035175442.1 hypothetical protein -
  SOZ35_RS06470 (SOZ35_06470) - 1284919..1285005 (-) 87 WP_073991391.1 YjcZ family sporulation protein -
  SOZ35_RS06475 (SOZ35_06475) - 1285187..1285510 (+) 324 Protein_1220 phage terminase small subunit-related protein -
  SOZ35_RS06480 (SOZ35_06480) - 1285527..1285768 (+) 242 Protein_1221 DUF1433 domain-containing protein -
  SOZ35_RS06485 (SOZ35_06485) - 1286002..1286271 (-) 270 WP_035175073.1 LCI fold-containing protein -
  SOZ35_RS06490 (SOZ35_06490) - 1286349..1286528 (+) 180 Protein_1223 hypothetical protein -
  SOZ35_RS06495 (SOZ35_06495) - 1286662..1286991 (-) 330 WP_106034571.1 hypothetical protein -
  SOZ35_RS06500 (SOZ35_06500) - 1287052..1287342 (-) 291 WP_340640484.1 hypothetical protein -
  SOZ35_RS06505 (SOZ35_06505) nucA/comI 1287533..1287958 (+) 426 WP_081250945.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  SOZ35_RS06510 (SOZ35_06510) - 1288106..1288768 (+) 663 WP_010788290.1 MgtC/SapB family protein -
  SOZ35_RS06515 (SOZ35_06515) - 1288827..1289066 (-) 240 WP_003327512.1 hypothetical protein -
  SOZ35_RS06520 (SOZ35_06520) - 1289280..1289423 (-) 144 WP_223251816.1 aspartyl-phosphate phosphatase Spo0E family protein -
  SOZ35_RS06525 (SOZ35_06525) - 1289552..1289773 (-) 222 WP_010788291.1 hypothetical protein -
  SOZ35_RS06530 (SOZ35_06530) - 1290088..1291488 (+) 1401 WP_340640485.1 polysaccharide deacetylase family protein -
  SOZ35_RS06535 (SOZ35_06535) - 1291541..1292014 (-) 474 WP_340640486.1 YjfA family protein -
  SOZ35_RS06540 (SOZ35_06540) - 1292151..1292561 (-) 411 WP_340640487.1 DUF2809 domain-containing protein -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15458.32 Da        Isoelectric Point: 4.7462

>NTDB_id=970472 SOZ35_RS06505 WP_081250945.1 1287533..1287958(+) (nucA/comI) [Bacillus atrophaeus strain TL401]
MKKWITSLFLTAAILFGLMGAEVYAPQDVKGASRYDQVLYFPFSRYPETGDHIKDAIAAGHSDVCTIDRAGADERREESL
KGIPTKPGYDRDEWPMAVCEEGGAGADIRYVTPSDNRGAGSWVGNQMSGYSDGTRVLFIVQ

Nucleotide


Download         Length: 426 bp        

>NTDB_id=970472 SOZ35_RS06505 WP_081250945.1 1287533..1287958(+) (nucA/comI) [Bacillus atrophaeus strain TL401]
ATGAAAAAATGGATCACGAGCTTATTTCTGACCGCAGCGATATTATTTGGATTGATGGGTGCGGAAGTGTATGCTCCGCA
GGATGTCAAAGGCGCATCACGGTATGATCAGGTTCTTTACTTCCCATTTTCACGTTATCCTGAAACCGGCGATCACATTA
AAGATGCGATAGCGGCCGGGCATTCAGATGTATGTACGATTGACAGGGCCGGGGCGGATGAGCGCAGGGAGGAGTCTTTA
AAGGGGATTCCTACGAAACCGGGGTATGACCGGGATGAGTGGCCGATGGCTGTATGTGAAGAAGGCGGGGCCGGGGCGGA
TATCCGGTATGTCACCCCATCTGATAATCGAGGCGCCGGTTCATGGGTCGGGAATCAAATGAGCGGTTATTCTGATGGTA
CGAGAGTATTATTTATCGTACAGTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(45-135)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

59.524

89.362

0.532

Multiple sequence alignment