Detailed information NTG0970468

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: VT188_RS06830
• Genome accession: NZ_CP177358
• Coordinates: 1455450..1456454 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain CWC0815
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1450450..1461454

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VT188_RS06800 (VT188_006800)	fghA	1450542..1451393 (+)	852	WP_003113869.1	S-formylglutathione hydrolase	-
VT188_RS06805 (VT188_006805)	ispF	1451464..1451937 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
VT188_RS06810 (VT188_006810)	truD	1451934..1453001 (+)	1068	WP_031633801.1	tRNA pseudouridine(13) synthase TruD	-
VT188_RS06815 (VT188_006815)	surE	1452989..1453738 (+)	750	WP_258154580.1	5'/3'-nucleotidase SurE	-
VT188_RS06820 (VT188_006820)	-	1453771..1454406 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
VT188_RS06825 (VT188_006825)	-	1454452..1455345 (+)	894	WP_003115226.1	peptidoglycan DD-metalloendopeptidase family protein	-
VT188_RS06830 (VT188_006830)	rpoS	1455450..1456454 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
VT188_RS06835 (VT188_006835)	fdxA	1456881..1457204 (-)	324	WP_003092272.1	ferredoxin FdxA	-
VT188_RS06840 (VT188_006840)	mutS	1457271..1459838 (-)	2568	WP_134227284.1	DNA mismatch repair protein MutS	-
VT188_RS06845 (VT188_006845)	-	1459964..1460971 (-)	1008	WP_003092265.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=970468 VT188_RS06830 WP_003113871.1 1455450..1456454(+) (rpoS) [Pseudomonas aeruginosa strain CWC0815]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=970468 VT188_RS06830 WP_003113871.1 1455450..1456454(+) (rpoS) [Pseudomonas aeruginosa strain CWC0815]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAG
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGTCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653