Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   SOZ35_RS06060 Genome accession   NZ_CP150480
Coordinates   1215727..1216680 (+) Length   317 a.a.
NCBI ID   WP_010788227.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain TL401     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1210727..1221680
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOZ35_RS06035 (SOZ35_06035) argF 1212537..1213490 (+) 954 WP_340640459.1 ornithine carbamoyltransferase -
  SOZ35_RS06040 (SOZ35_06040) - 1213589..1213768 (+) 180 WP_003327605.1 YjzC family protein -
  SOZ35_RS06045 (SOZ35_06045) - 1213797..1213985 (-) 189 WP_003327604.1 YjzD family protein -
  SOZ35_RS06050 (SOZ35_06050) - 1214245..1214979 (+) 735 WP_340640460.1 hypothetical protein -
  SOZ35_RS06055 (SOZ35_06055) - 1215062..1215637 (+) 576 WP_010788226.1 hypothetical protein -
  SOZ35_RS06060 (SOZ35_06060) med 1215727..1216680 (+) 954 WP_010788227.1 BMP family ABC transporter substrate-binding protein Regulator
  SOZ35_RS06065 (SOZ35_06065) comZ 1216695..1216886 (+) 192 WP_340640461.1 ComZ family protein Regulator
  SOZ35_RS06070 (SOZ35_06070) - 1216916..1217143 (-) 228 WP_003327598.1 hypothetical protein -
  SOZ35_RS06075 (SOZ35_06075) fabH 1217315..1218253 (+) 939 WP_003327597.1 beta-ketoacyl-ACP synthase III -
  SOZ35_RS06080 (SOZ35_06080) fabF 1218275..1219513 (+) 1239 WP_340640462.1 beta-ketoacyl-ACP synthase II -
  SOZ35_RS06085 (SOZ35_06085) - 1219591..1220376 (+) 786 WP_340640463.1 DUF2268 domain-containing protein -
  SOZ35_RS06090 (SOZ35_06090) - 1220568..1221554 (+) 987 WP_010788232.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35410.91 Da        Isoelectric Point: 4.4404

>NTDB_id=970466 SOZ35_RS06060 WP_010788227.1 1215727..1216680(+) (med) [Bacillus atrophaeus strain TL401]
MITRLVMIFSVLLLLSGCGQTPFKGKIEKVGMLFPDTINDLVWGTKGYKGLLSIQSAYNVDVYYKEGVKTDEDILNAIED
YHKRGINLLFGHGSEYEEMFNLVSEDYPDMEFVISNAESKADNVTSVHLNGEAMGFFGGMTAAHMSKTNQIGVIASFKWQ
PEVDGFIKGAKYENPDITINTKYTDHWDDDTTAVKLYEKIKEEGADVVYPAGDGYNVPVIQQIKKDGLYAIGYVTDQSDL
GENTVLTSTVQNVDKAYGIIAEQYSNGILESGDHYFDFKDHVVEMGTFSPLVDKAFQDKIAALIKTYNRTDELPKKE

Nucleotide


Download         Length: 954 bp        

>NTDB_id=970466 SOZ35_RS06060 WP_010788227.1 1215727..1216680(+) (med) [Bacillus atrophaeus strain TL401]
ATGATCACTAGGCTTGTCATGATCTTTTCTGTCCTCCTGTTACTGAGCGGATGTGGACAAACTCCGTTTAAAGGAAAAAT
TGAGAAGGTCGGTATGCTCTTTCCCGATACCATCAATGATCTAGTGTGGGGAACAAAAGGGTATAAAGGTTTACTAAGTA
TACAATCTGCATATAATGTCGACGTCTATTATAAAGAAGGCGTTAAGACTGATGAGGATATATTAAACGCCATTGAAGAT
TACCACAAGAGAGGGATAAACCTTCTTTTTGGCCATGGCAGTGAATACGAAGAAATGTTTAATCTGGTCAGTGAGGATTA
CCCGGACATGGAATTTGTCATTTCTAACGCGGAATCAAAAGCCGACAACGTCACAAGCGTTCATCTTAACGGAGAAGCGA
TGGGTTTTTTCGGCGGGATGACAGCCGCACATATGTCCAAAACCAATCAAATTGGCGTGATTGCTTCTTTTAAATGGCAG
CCTGAAGTAGACGGCTTCATCAAAGGGGCCAAGTATGAAAATCCGGACATCACTATCAATACGAAATATACAGACCACTG
GGATGACGATACCACAGCCGTGAAGCTTTATGAGAAGATAAAAGAGGAAGGCGCGGATGTTGTATATCCCGCCGGAGATG
GGTATAATGTTCCTGTCATTCAACAAATTAAAAAAGACGGTCTCTATGCGATCGGCTATGTCACAGACCAGTCTGATCTG
GGCGAAAATACCGTTTTGACAAGCACTGTTCAAAATGTGGACAAGGCCTATGGCATCATAGCCGAGCAATACAGCAACGG
CATTTTGGAAAGCGGAGATCACTATTTCGATTTTAAAGATCATGTCGTTGAAATGGGGACATTCAGTCCTCTTGTTGACA
AAGCCTTCCAAGATAAAATTGCCGCTCTTATCAAAACGTATAATCGAACAGATGAACTGCCGAAAAAAGAGTAA

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(27-316)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

87.382

100

0.874

Multiple sequence alignment