Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   SOZ35_RS05660 Genome accession   NZ_CP150480
Coordinates   1139207..1139782 (+) Length   191 a.a.
NCBI ID   WP_010788160.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain TL401     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1134207..1144782
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOZ35_RS05640 (SOZ35_05640) - 1134637..1135935 (-) 1299 WP_010788156.1 globin-coupled sensor protein -
  SOZ35_RS05645 (SOZ35_05645) - 1136094..1137626 (-) 1533 WP_061670464.1 FAD-dependent oxidoreductase -
  SOZ35_RS05650 (SOZ35_05650) - 1137760..1138617 (+) 858 WP_340640424.1 SDR family oxidoreductase -
  SOZ35_RS05655 (SOZ35_05655) - 1138648..1138881 (-) 234 WP_003327696.1 IDEAL domain-containing protein -
  SOZ35_RS05660 (SOZ35_05660) comK 1139207..1139782 (+) 576 WP_010788160.1 competence protein ComK Regulator
  SOZ35_RS05665 (SOZ35_05665) - 1140000..1140272 (+) 273 WP_003327694.1 excalibur calcium-binding domain-containing protein -
  SOZ35_RS05670 (SOZ35_05670) - 1140300..1141787 (-) 1488 WP_340640425.1 sodium:solute symporter -
  SOZ35_RS05675 (SOZ35_05675) - 1141784..1141984 (-) 201 WP_003327692.1 DUF3311 domain-containing protein -
  SOZ35_RS05680 (SOZ35_05680) - 1142109..1142474 (-) 366 WP_340640426.1 hypothetical protein -
  SOZ35_RS05685 (SOZ35_05685) - 1142629..1143252 (+) 624 WP_277714522.1 TVP38/TMEM64 family protein -
  SOZ35_RS05690 (SOZ35_05690) lepB 1143255..1143755 (+) 501 WP_003327688.1 signal peptidase I -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 22264.48 Da        Isoelectric Point: 8.1215

>NTDB_id=970463 SOZ35_RS05660 WP_010788160.1 1139207..1139782(+) (comK) [Bacillus atrophaeus strain TL401]
MSQKTDAPLDTYEVNSSTIAVLPEPMNGKMYSKIIEKDCTFYVSMKPLQIVDRSCRYFGSSYAGRKAGTYEVINISHKPP
IMVDLSNHIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTAVTFSNGKTMELPVSCNSFENQVYRTAWLRTKFQDRVEH
APKRQEFMLYPKEERTRMIYDFILRELGERY

Nucleotide


Download         Length: 576 bp        

>NTDB_id=970463 SOZ35_RS05660 WP_010788160.1 1139207..1139782(+) (comK) [Bacillus atrophaeus strain TL401]
ATGAGTCAGAAAACTGACGCACCCCTAGACACCTACGAAGTAAACAGCTCAACAATCGCCGTATTGCCCGAACCGATGAA
CGGGAAAATGTACTCAAAGATCATTGAAAAGGACTGCACGTTTTATGTCAGCATGAAACCGCTGCAAATTGTCGACCGAA
GCTGCCGTTACTTTGGCTCAAGTTATGCGGGAAGAAAAGCGGGAACCTATGAAGTGATTAACATTTCTCACAAGCCGCCG
ATCATGGTGGACCTTTCCAACCATATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCACA
CGTGCATGTAAAAGAATTTAAAGCCACGGAATTCGACGATACAGCTGTGACCTTTTCCAATGGAAAAACAATGGAGCTCC
CGGTCTCCTGCAATTCGTTCGAAAACCAGGTCTACCGCACGGCATGGCTCAGAACAAAATTCCAAGACCGGGTCGAACAC
GCGCCAAAACGGCAGGAATTCATGCTGTACCCGAAGGAAGAACGCACGCGGATGATTTATGATTTTATTTTGCGCGAGCT
GGGCGAGCGGTACTGA

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

87.5

100

0.88

Multiple sequence alignment