Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   SOZ35_RS01995 Genome accession   NZ_CP150480
Coordinates   386332..386769 (-) Length   145 a.a.
NCBI ID   WP_003328076.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain TL401     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 381332..391769
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOZ35_RS01960 (SOZ35_01960) - 381906..382361 (+) 456 WP_340640183.1 RDD family protein -
  SOZ35_RS01965 (SOZ35_01965) - 382446..382775 (+) 330 WP_010787600.1 YckD family protein -
  SOZ35_RS01970 (SOZ35_01970) - 382879..383304 (+) 426 WP_003328070.1 MarR family transcriptional regulator -
  SOZ35_RS01975 (SOZ35_01975) - 383292..383633 (+) 342 WP_013390751.1 DUF3147 family protein -
  SOZ35_RS01980 (SOZ35_01980) - 383653..384372 (+) 720 WP_003328073.1 AAA family ATPase -
  SOZ35_RS01985 (SOZ35_01985) - 384442..385878 (+) 1437 WP_268520608.1 family 1 glycosylhydrolase -
  SOZ35_RS01990 (SOZ35_01990) nin/comJ 385915..386313 (-) 399 WP_003328075.1 competence protein ComJ Regulator
  SOZ35_RS01995 (SOZ35_01995) nucA/comI 386332..386769 (-) 438 WP_003328076.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  SOZ35_RS02000 (SOZ35_02000) - 386990..388693 (-) 1704 WP_340640184.1 methyl-accepting chemotaxis protein -
  SOZ35_RS02005 (SOZ35_02005) hxlB 388822..389379 (-) 558 WP_340640185.1 6-phospho-3-hexuloisomerase -
  SOZ35_RS02010 (SOZ35_02010) hxlA 389386..390018 (-) 633 WP_326085433.1 3-hexulose-6-phosphate synthase -
  SOZ35_RS02015 (SOZ35_02015) - 390237..390602 (+) 366 WP_003328081.1 winged helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 15947.73 Da        Isoelectric Point: 4.1969

>NTDB_id=970452 SOZ35_RS01995 WP_003328076.1 386332..386769(-) (nucA/comI) [Bacillus atrophaeus strain TL401]
MDLLKSLLLILVIIAAAIAGLVKGDFFSENQKASEDKEYDETISFPSDRYPETAKHIQDAINEGESDVCTIDRDGAEARR
EQSLKDVAVKTGYDRDEWPMAMCKEGGEGASVEYIAPSDNRGAGSWVGHQLTDYPDGTKVLFTIQ

Nucleotide


Download         Length: 438 bp        

>NTDB_id=970452 SOZ35_RS01995 WP_003328076.1 386332..386769(-) (nucA/comI) [Bacillus atrophaeus strain TL401]
ATGGACTTATTGAAATCATTGCTGCTCATATTGGTGATCATTGCTGCCGCCATTGCCGGGCTGGTTAAAGGCGATTTTTT
CTCAGAAAATCAAAAGGCGTCTGAAGACAAAGAGTATGACGAAACGATTTCTTTCCCATCAGATCGTTATCCTGAAACTG
CGAAACATATTCAAGATGCGATCAATGAAGGTGAGTCAGATGTGTGCACAATTGACAGGGACGGAGCTGAAGCACGACGA
GAACAATCTTTAAAAGATGTGGCAGTCAAAACAGGATACGATCGGGACGAATGGCCGATGGCAATGTGTAAAGAAGGCGG
AGAAGGTGCGTCTGTGGAGTATATCGCCCCGTCGGACAATCGCGGGGCTGGCTCATGGGTCGGTCATCAGCTCACTGATT
ATCCAGATGGAACGAAAGTGTTATTTACCATTCAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

81.944

99.31

0.814

Multiple sequence alignment