Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   SOZ35_RS00245 Genome accession   NZ_CP150480
Coordinates   44539..44829 (-) Length   96 a.a.
NCBI ID   WP_087941801.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain TL401     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 39539..49829
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOZ35_RS00205 (SOZ35_00205) darA 39557..39886 (+) 330 WP_003328606.1 cyclic di-AMP receptor DarA -
  SOZ35_RS00210 (SOZ35_00210) - 39899..40339 (+) 441 WP_003328605.1 YaaR family protein -
  SOZ35_RS00215 (SOZ35_00215) holB 40351..41340 (+) 990 WP_340640083.1 DNA polymerase III subunit delta' -
  SOZ35_RS00220 (SOZ35_00220) ricT 41343..42170 (+) 828 WP_003328602.1 competence/sporulation regulator complex protein RicT -
  SOZ35_RS00225 (SOZ35_00225) yabA 42185..42544 (+) 360 WP_003328601.1 replication initiation-control protein YabA -
  SOZ35_RS00230 (SOZ35_00230) - 42605..43348 (+) 744 WP_003328600.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  SOZ35_RS00235 (SOZ35_00235) - 43335..43634 (+) 300 WP_063639019.1 GIY-YIG nuclease family protein -
  SOZ35_RS00240 (SOZ35_00240) rsmI 43609..44487 (+) 879 WP_034717636.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  SOZ35_RS00245 (SOZ35_00245) abrB 44539..44829 (-) 291 WP_087941801.1 transition state genes transcriptional regulator AbrB Regulator
  SOZ35_RS00250 (SOZ35_00250) metG 45316..47310 (+) 1995 WP_340640084.1 methionine--tRNA ligase -
  SOZ35_RS00255 (SOZ35_00255) - 47389..48156 (+) 768 WP_340640085.1 TatD family hydrolase -
  SOZ35_RS00260 (SOZ35_00260) - 48314..49639 (+) 1326 WP_268487989.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10801.62 Da        Isoelectric Point: 6.3482

>NTDB_id=970447 SOZ35_RS00245 WP_087941801.1 44539..44829(-) (abrB) [Bacillus atrophaeus strain TL401]
MFMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSQEG
AEQIIKEIQNQLQSQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=970447 SOZ35_RS00245 WP_087941801.1 44539..44829(-) (abrB) [Bacillus atrophaeus strain TL401]
ATGTTTATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTAGGACGTGTAGTTATTCCTATCGAACTGCGCCGTAC
ACTTGGAATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAGCCTAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGACGATAACCTTAAACTTGCAGGCGGTAAATTGGTTCTTAGCCAAGAAGGC
GCTGAGCAAATCATTAAAGAAATCCAAAACCAGCTTCAAAGCCAAAAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)

AbrB C-terminal domain (AbrB_C)

(55-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

95.833

100

0.958

Multiple sequence alignment