Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   VUK78_RS17840 Genome accession   NZ_CP150467
Coordinates   1543754..1545175 (-) Length   473 a.a.
NCBI ID   WP_005445536.1    Uniprot ID   A0A9X3ML51
Organism   Vibrio harveyi strain NH-LM1     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1538754..1550175
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VUK78_RS17815 (VUK78_17815) - 1539447..1540097 (+) 651 WP_042606219.1 thiopurine S-methyltransferase -
  VUK78_RS17820 (VUK78_17820) purT 1540175..1541350 (-) 1176 WP_340700393.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  VUK78_RS17825 (VUK78_17825) cdd 1541499..1542386 (-) 888 WP_005445539.1 cytidine deaminase -
  VUK78_RS17830 (VUK78_17830) - 1542642..1543319 (-) 678 WP_005445538.1 LrgB family protein -
  VUK78_RS17835 (VUK78_17835) - 1543321..1543695 (-) 375 WP_005445537.1 CidA/LrgA family protein -
  VUK78_RS17840 (VUK78_17840) sbcB 1543754..1545175 (-) 1422 WP_005445536.1 exodeoxyribonuclease I Machinery gene
  VUK78_RS17845 (VUK78_17845) - 1545337..1546017 (-) 681 WP_005445535.1 DUF1826 domain-containing protein -
  VUK78_RS17850 (VUK78_17850) - 1546239..1547612 (-) 1374 WP_053050855.1 L-cystine transporter -
  VUK78_RS17855 (VUK78_17855) - 1547807..1548502 (-) 696 WP_340700394.1 NAD(P)H-binding protein -
  VUK78_RS17860 (VUK78_17860) - 1549225..1549842 (+) 618 WP_340700395.1 flavin reductase family protein -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54569.91 Da        Isoelectric Point: 4.9808

>NTDB_id=970423 VUK78_RS17840 WP_005445536.1 1543754..1545175(-) (sbcB) [Vibrio harveyi strain NH-LM1]
MHQDNQPTFFFFDYETWGTSPAKDRPSQFAGVRTDENFNIIGEPLVMYCRPPADYLPSPEAALITGITPQKAMQEGLPEP
EFIAKIHAELSKPKTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRACHALRPEGVEWPENDEGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRNKRKLNELVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSAEELKERLYTKRDELGDLLPVPVKLVHLNKCPILAPAKTLTAENAEV
IGIDRQQCLNNLALLRQHPEIREKLISLFSIEREFEKSNDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARHYAGTLDEQEQRRWAQHCREVFESQIEEYMMNLENLVHEHESDEKKIAILKSVYRYVESLAS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=970423 VUK78_RS17840 WP_005445536.1 1543754..1545175(-) (sbcB) [Vibrio harveyi strain NH-LM1]
ATGCACCAAGACAATCAGCCCACTTTTTTCTTTTTCGATTACGAGACTTGGGGAACAAGTCCAGCCAAAGACCGCCCAAG
CCAGTTTGCTGGCGTTCGCACTGATGAAAACTTCAATATCATTGGTGAACCTTTGGTGATGTACTGTCGTCCACCTGCTG
ATTACCTTCCTTCGCCAGAAGCAGCTTTGATCACTGGTATTACACCACAAAAAGCAATGCAAGAAGGCTTACCTGAACCT
GAGTTTATTGCCAAAATTCATGCCGAATTGTCTAAACCAAAGACGACTAGCCTTGGCTACAACAGCATACGTTTTGATGA
TGAAGTCACTCGTTACACTTGCTACCGAAACTTCATCGACCCATACGCATGGAGCTGGCAAAACGGCAACTCACGATGGG
ATTTGCTTGACGTGATGCGAGCATGTCATGCCCTGCGTCCTGAAGGCGTAGAATGGCCAGAGAACGATGAAGGCTTTACA
AGCTTCAAGCTAGAGCATTTATCCGTAGCGAATGGCATTGAACACAGCAATGCTCACGATGCGATGGCCGACGTGATTGC
CACGATTGAAATGGCGAAGAAAGTTAAAGCCGCCCAACCTAAGCTATTTGACTACTTTTTCTCGATGCGTAACAAGCGCA
AACTCAATGAGCTGGTTGATATTGTCAATATGACTCCGTTGATGCATGTATCAGGCATGCTTGGGCGTGAATGCCAATAC
ACAAGCTGGATTGTGCCTGTGGCTTGGCACCCAACCAACAACAACGCTGTTATCACGATTGATTTAGCCAAAGATCCTCA
GCCGATCCTTGAACTTTCAGCGGAAGAACTGAAAGAACGATTGTACACCAAGCGCGACGAATTGGGCGACTTACTGCCTG
TCCCCGTGAAGCTAGTGCATCTGAACAAGTGCCCTATTCTCGCTCCAGCAAAAACATTAACCGCGGAAAATGCGGAAGTC
ATTGGTATTGACCGCCAACAATGTCTAAACAATTTAGCGTTGTTGCGCCAACACCCAGAGATCCGAGAGAAGCTGATTAG
TCTATTCTCTATAGAACGTGAATTCGAAAAGAGTAATGACGTTGATACGCAGCTTTACGATGGCTTTTTCTCGCCTGCTG
ATCGCGCTGCTATGGACATCATTCGTGAAACCGATCCGAATAACTTAGCCGCACTGGACATTGAATTCGATGATAAACGA
ATCAAGCCATTGCTTTTCCGTTACCGTGCTCGCCATTATGCAGGCACATTAGATGAACAAGAACAAAGACGCTGGGCACA
ACATTGTCGTGAAGTTTTCGAAAGTCAGATTGAAGAGTACATGATGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATAGCAATATTAAAATCCGTCTATCGTTATGTAGAGAGCCTAGCCTCCTAA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)

Exonuclease (RNase_T)

(11-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

79.281

100

0.793

Multiple sequence alignment