Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   R8377_RS01435 Genome accession   NZ_AP026800
Coordinates   381460..383280 (+) Length   606 a.a.
NCBI ID   WP_317643654.1    Uniprot ID   -
Organism   Bombiscardovia apis strain KimH     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 376460..388280
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8377_RS01415 (KIMH_02780) - 377057..377848 (-) 792 WP_317643653.1 mechanosensitive ion channel domain-containing protein -
  R8377_RS01420 (KIMH_02790) - 378082..378744 (+) 663 WP_317643189.1 sugar O-acetyltransferase -
  R8377_RS01425 (KIMH_02800) - 378881..379345 (+) 465 WP_317643190.1 MarR family transcriptional regulator -
  R8377_RS01430 (KIMH_02810) rcrP 379569..381338 (+) 1770 WP_317643191.1 ABC transporter ATP-binding protein Regulator
  R8377_RS01435 (KIMH_02820) rcrQ 381460..383280 (+) 1821 WP_317643654.1 ABC transporter ATP-binding protein Regulator
  R8377_RS01440 (KIMH_02830) - 383348..383587 (-) 240 WP_317643192.1 hypothetical protein -

Sequence

Protein


Download         Length: 606 a.a.        Molecular weight: 66649.92 Da        Isoelectric Point: 5.8278

>NTDB_id=97042 R8377_RS01435 WP_317643654.1 381460..383280(+) (rcrQ) [Bombiscardovia apis strain KimH]
MGGPGPVEKPESFGTAMKQLGRFSKRYIPAVIVAFIFGAVGAACQIVGPEWLKKVTDAIAKGMPAIVHGKPVLGSIDLAY
VERICFVLVGLYVGYAVLTYVQSWIMATMTQRTAQNLREAISEKINRLPLKYFDKVSYGDVLSRITNDVDAIGQTLGQSL
GSLVISITTFVGSLIMMFLNNVTMTFVAIGSAVVGTILMMVIMKFSQKYFVRQQIALGDVNGHVEEKYAGHVIVKAYSGE
KDSIEEFERYNADLYESGWKSQFLSSLMMPLMNFVGNFGYVAVCVVGASLAMNGTITFGVIVAFMMYIRLFTQPLSQFAQ
AFQNLQRTAAASERVFGFLNEPEMDGEEGKQGLLGEGKPVEGHVKFEHVNFSYDGEHKVIRDFTAEAQPGQKVALVGPTG
AGKTTMVNLLMRFYELDSGSISIDGIPTCDVPRWNVHDQFSMVLQDTWVFRGTVKENIVYAKKGVSDEQVVEACKAVGLD
HFIRTLPQGYDTVLTDDTSLSQGQRQLMTIARAMVQDAPILILDEATSSVDTRTEELIQKAMDALSKGRTSFVIAHRLST
IRDADLILVMNHGQIIERGTHDELLKQGGFYADLYNSQFASAELLA

Nucleotide


Download         Length: 1821 bp        

>NTDB_id=97042 R8377_RS01435 WP_317643654.1 381460..383280(+) (rcrQ) [Bombiscardovia apis strain KimH]
ATGGGTGGCCCCGGACCGGTGGAAAAGCCGGAGAGCTTCGGTACAGCCATGAAACAGCTGGGGCGCTTCTCGAAGCGATA
CATTCCAGCCGTTATTGTTGCTTTCATTTTTGGTGCGGTAGGAGCTGCCTGCCAGATTGTGGGCCCGGAATGGCTGAAGA
AAGTCACCGATGCTATTGCCAAGGGCATGCCCGCAATCGTCCACGGCAAGCCGGTTTTGGGTTCTATCGATTTGGCTTAT
GTGGAGCGCATTTGCTTCGTATTGGTGGGCCTGTACGTGGGCTACGCCGTGTTGACCTATGTGCAGTCTTGGATTATGGC
TACCATGACCCAGCGTACGGCTCAGAACTTGCGTGAGGCAATTTCGGAGAAAATCAACCGTCTGCCCTTAAAATATTTCG
ACAAGGTCTCCTACGGTGACGTGCTGTCGCGCATTACCAACGATGTAGACGCCATCGGCCAGACCTTAGGGCAGAGCTTG
GGATCGCTCGTTATATCGATTACCACTTTTGTGGGCTCGCTCATTATGATGTTCCTTAATAACGTAACTATGACCTTCGT
GGCCATCGGTTCAGCAGTTGTGGGCACTATCTTAATGATGGTCATTATGAAGTTCTCCCAAAAGTATTTCGTGCGCCAGC
AGATTGCTCTGGGTGATGTAAACGGTCACGTGGAAGAGAAGTATGCGGGCCACGTAATTGTCAAGGCCTACTCGGGCGAA
AAAGACTCGATTGAGGAGTTCGAGCGCTACAACGCAGACCTCTACGAGTCGGGCTGGAAGTCGCAGTTCCTCTCCTCGCT
GATGATGCCTCTGATGAACTTCGTAGGCAACTTCGGCTACGTGGCAGTGTGTGTGGTCGGTGCTTCCCTAGCCATGAACG
GCACTATTACTTTCGGCGTGATTGTGGCCTTCATGATGTATATTCGCCTCTTCACACAGCCCCTGAGCCAGTTCGCGCAG
GCCTTCCAAAACCTCCAGCGCACGGCTGCTGCTTCCGAGCGCGTCTTCGGTTTCCTCAACGAGCCCGAGATGGATGGCGA
AGAAGGCAAGCAAGGGCTGCTGGGTGAGGGCAAGCCGGTCGAGGGCCACGTCAAGTTTGAGCACGTGAACTTCTCCTACG
ATGGTGAGCACAAGGTTATTCGCGACTTCACTGCCGAGGCTCAGCCGGGCCAAAAGGTAGCGCTAGTTGGTCCCACTGGC
GCTGGCAAAACGACCATGGTCAACCTGCTCATGCGCTTCTACGAGCTCGACTCGGGCAGTATCAGCATCGACGGCATTCC
CACTTGCGATGTGCCGCGCTGGAATGTGCACGACCAGTTCTCCATGGTTTTGCAAGACACTTGGGTATTCCGCGGCACTG
TCAAAGAGAATATCGTGTATGCCAAGAAGGGCGTAAGCGACGAGCAAGTAGTGGAAGCGTGCAAGGCTGTGGGCCTCGAC
CACTTCATTCGCACCCTGCCTCAGGGCTACGACACGGTTTTGACTGACGACACTTCACTCTCCCAGGGCCAACGCCAGCT
GATGACCATCGCCCGCGCCATGGTGCAAGATGCGCCCATCCTGATTTTGGACGAGGCTACTTCTTCGGTCGATACCCGCA
CCGAGGAGCTGATTCAAAAGGCTATGGATGCTCTGAGCAAGGGCCGCACTTCCTTCGTAATTGCCCACCGCCTCTCCACG
ATTCGCGACGCTGACCTAATCCTGGTTATGAACCACGGCCAGATTATCGAGCGCGGTACCCACGACGAACTGCTCAAGCA
GGGCGGTTTCTACGCCGACCTCTACAACAGCCAGTTCGCCTCCGCTGAGCTTTTGGCCTAG

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(31-315)

ABC transporter (ABC_tran)

(382-528)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

54.545

96.205

0.525

Multiple sequence alignment