Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   R8377_RS01430 Genome accession   NZ_AP026800
Coordinates   379569..381338 (+) Length   589 a.a.
NCBI ID   WP_317643191.1    Uniprot ID   -
Organism   Bombiscardovia apis strain KimH     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 374569..386338
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8377_RS01405 (KIMH_02760) - 374965..375714 (+) 750 WP_317643186.1 response regulator transcription factor -
  R8377_RS01410 (KIMH_02770) - 375838..377070 (+) 1233 WP_317643188.1 Fic family protein -
  R8377_RS01415 (KIMH_02780) - 377057..377848 (-) 792 WP_317643653.1 mechanosensitive ion channel domain-containing protein -
  R8377_RS01420 (KIMH_02790) - 378082..378744 (+) 663 WP_317643189.1 sugar O-acetyltransferase -
  R8377_RS01425 (KIMH_02800) - 378881..379345 (+) 465 WP_317643190.1 MarR family transcriptional regulator -
  R8377_RS01430 (KIMH_02810) rcrP 379569..381338 (+) 1770 WP_317643191.1 ABC transporter ATP-binding protein Regulator
  R8377_RS01435 (KIMH_02820) rcrQ 381460..383280 (+) 1821 WP_317643654.1 ABC transporter ATP-binding protein Regulator
  R8377_RS01440 (KIMH_02830) - 383348..383587 (-) 240 WP_317643192.1 hypothetical protein -

Sequence

Protein


Download         Length: 589 a.a.        Molecular weight: 64794.04 Da        Isoelectric Point: 6.2750

>NTDB_id=97041 R8377_RS01430 WP_317643191.1 379569..381338(+) (rcrP) [Bombiscardovia apis strain KimH]
MIRICRYLSKSEVGQLFLVIAFIVTQVWLDLKLPDYMADITRQVETPGSQMSEIWQAGGKMLLVSFLSLACAVLTSYFAV
RVASSFSQHLRSLEFAKVESFSTAELGQFSTASLITRSTNDVTQVQMFITMGLVMLVKAPIMAVWAVCKIAGKGFEWTMA
TGIAVVILLVIVGLLMAFVMPKFKRMQALTDNINQVARENLTGLRVVRAYNAENYQESKFTKANDELTGTQLSTTRAMGL
MMPVMNTIMNGLMLAVYWIGAYLINAAGFQDRITLFGNMVVFSSYAVQVIMSFLLMSMVFVLWPRADVSAHRIMEVLDTK
PSITDGSERSGKPGSEGQVAFHDVSFTYPGASAPILEHVDFSVDKGQTIAFIGSTGSGKSTLINLVPRFADVSGGEVMVD
GVDVRNYEVKALRDKIGYVPQQSFMFRGTVESNVAYGDQAEGVNDAEKLERVKEAVGVAQAEEFVSGMPDTYHSDISQGG
SNVSGGQKQRLSIARAVWRKPEILIFDDSFSALDFKTDREVRDALKTQMKGTTMMIVAQRIGTIMDADQIVVLDQGRVVG
KGTHQELLKTCEVYQQIAKSQLTEKELAA

Nucleotide


Download         Length: 1770 bp        

>NTDB_id=97041 R8377_RS01430 WP_317643191.1 379569..381338(+) (rcrP) [Bombiscardovia apis strain KimH]
ATGATACGAATCTGTCGTTATCTGTCCAAAAGCGAGGTGGGCCAACTCTTCTTGGTCATCGCCTTCATTGTGACGCAGGT
GTGGCTGGACTTGAAGCTACCCGATTACATGGCAGACATCACCCGTCAGGTGGAAACTCCGGGCAGTCAGATGAGCGAGA
TTTGGCAGGCCGGCGGCAAGATGCTCCTAGTCTCCTTCCTCTCCCTGGCCTGCGCCGTGCTCACCTCCTACTTCGCCGTG
CGCGTGGCTTCGTCTTTCTCGCAGCACTTGCGCTCGCTGGAGTTTGCCAAGGTGGAGTCCTTCTCGACTGCTGAGCTGGG
CCAGTTCTCAACCGCCTCGCTCATTACTCGCTCTACCAACGATGTAACCCAGGTGCAGATGTTTATCACCATGGGTCTAG
TCATGCTCGTTAAGGCCCCAATTATGGCCGTTTGGGCCGTCTGCAAGATTGCGGGCAAGGGGTTTGAGTGGACTATGGCT
ACCGGAATTGCAGTCGTGATTCTCTTGGTCATCGTGGGGCTCTTAATGGCCTTCGTAATGCCGAAGTTTAAGCGGATGCA
GGCCCTGACTGACAATATCAACCAAGTGGCTCGCGAAAACCTGACCGGCCTGCGGGTGGTACGTGCTTACAACGCTGAAA
ACTATCAGGAAAGCAAGTTCACCAAGGCCAACGACGAGTTGACCGGAACTCAGCTCTCCACCACCCGCGCGATGGGCCTG
ATGATGCCAGTGATGAACACTATTATGAACGGTCTCATGCTGGCCGTCTATTGGATTGGCGCCTACTTAATTAATGCCGC
CGGCTTCCAAGATCGCATCACCCTCTTCGGCAATATGGTGGTCTTCTCCTCCTACGCCGTGCAGGTCATCATGTCCTTCT
TGCTTATGAGCATGGTCTTCGTGCTCTGGCCGCGCGCCGACGTCTCCGCCCACCGCATTATGGAAGTGCTCGATACTAAG
CCCTCCATCACCGACGGCAGTGAGCGCTCCGGCAAACCTGGCAGCGAAGGTCAGGTAGCTTTCCATGACGTATCCTTCAC
ATATCCCGGCGCTTCGGCCCCGATTCTGGAGCATGTCGACTTCTCGGTCGATAAGGGCCAAACGATTGCCTTTATTGGCT
CCACCGGCTCGGGCAAGTCCACGCTGATTAATCTCGTGCCCCGCTTTGCCGACGTCTCGGGTGGTGAAGTCATGGTCGAC
GGCGTAGACGTGCGCAACTACGAGGTGAAGGCCTTGCGAGACAAGATTGGCTACGTGCCTCAGCAGTCCTTCATGTTCCG
CGGAACTGTCGAGTCGAATGTGGCTTACGGCGACCAAGCTGAGGGTGTGAATGATGCCGAAAAGCTTGAGCGCGTTAAGG
AAGCGGTGGGCGTGGCTCAGGCTGAGGAGTTCGTCTCCGGCATGCCCGATACCTATCACTCGGATATCTCCCAAGGCGGT
TCTAACGTATCAGGTGGTCAAAAGCAGCGCCTCTCCATCGCCCGCGCCGTGTGGAGGAAGCCGGAGATTCTGATTTTCGA
CGACTCCTTCTCGGCTCTCGATTTTAAGACCGACCGCGAAGTGCGCGACGCTTTGAAAACTCAGATGAAGGGGACCACGA
TGATGATTGTGGCCCAGCGCATCGGCACCATCATGGATGCCGACCAGATTGTGGTCTTGGACCAGGGCCGCGTCGTAGGT
AAGGGCACCCACCAAGAGTTGCTGAAAACTTGCGAGGTCTACCAGCAGATTGCCAAAAGCCAGCTGACCGAAAAGGAGCT
GGCCGCGTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(356-509)

ABC transporter transmembrane region (ABC_membrane)

(58-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

49.917

100

0.509

Multiple sequence alignment